Query= MSMg01no487_j21.b1 MSMg01no487_j21.b1 CHROMAT_FILE:
MSMg01no487_j21.b1 PHD_FILE: MSMg01no487_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:16 2005
(617 letters)
>mm_chr19_16498128_16499146
Length = 1019
Score = 1054 bits (545), Expect = 0.0
Identities = 606/641 (94%), Gaps = 24/641 (3%)
Strand = Plus / Minus
Query: 1 agaatcatatcctgtcctttaagaaggagggtttggtagtgacccacttcccagctaact 60
||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 841 agaatcacatcctgtcctataagaaggagggtttggtagtggcccacttcccagctaact 782
Query: 61 ttggcaatatctggaaatatttttggttgtcacaactcaaggggaggggttaaaatacct 120
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 781 ttggcaatatctggaaatatttttggttgtcaaaactcaaggagaggggttaaaatacct 722
Query: 121 agtgaatagaggccaggatatctaagcatgcatttcatgggacagcttccacccaagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agtgaatagaggccaggatatctaagcatgcatttcatgggacagcttccacccaagaca 662
Query: 181 aattcatacacagagaccccagcctaatatcactactgagcaaactagagaaaaatcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aattcatacacagagaccccagcctaatatcactactgagcaaactagagaaaaatcagt 602
Query: 241 ctatattcttaagagaaaagcaaaggaagaaaatgcaagatttatctatattaaagttag 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctagattcttaagagaaaagcaaaggaagaaaatgcaagatttatctatattaaagttag 542
Query: 301 ctaccaccaagggcaggcacagcggaggcagtgagcataaggaatagttgggcaacctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctaccaccaagggcaggcacagcggaggcagtgagcataaggaatagttgggcaacctag 482
Query: 361 gactctacttgtcttgggctgtgcatgcctcttct--aataatgcatttgggaatctggc 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 gactctacttgtcttgggctgtgcatgcctcttcttctataatgcatttgggaatctggc 422
Query: 419 tgttttacctgcatgtactatgt----------------------acacacacacataca 456
||||||||||||||||||||||| ||||||||||| |||
Sbjct: 421 tgttttacctgcatgtactatgtacacacacacacacacacacacacacacacacacaca 362
Query: 457 cctttccaaacaatacacctaacaaccttggacttcacttgcaatgggcttcaagtacac 516
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 cctttccaaacaatacacctaacaaccttggacttcacctgcaatgggcttcaagtacac 302
Query: 517 ctccctataaaaccaatgaaataagagtctccctgcataaaaatgatcaaacttgaacag 576
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 301 ctccctataaaaccaatgaaataagactctccctgcataaaagtgatcaaacttgaacag 242
Query: 577 attctgtttattcttactcgcatcatattagagcggaagaa 617
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attctgtttattcttactcgcatcatattagagcggaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space: 612463
Effective search space used: 612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_j21.g1 MSMg01no487_j21.g1 CHROMAT_FILE:
MSMg01no487_j21.g1 PHD_FILE: MSMg01no487_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:16 2005
(694 letters)
>mm_chr19_16345152_16346245
Length = 1094
Score = 1272 bits (658), Expect = 0.0
Identities = 685/694 (98%)
Strand = Plus / Plus
Query: 1 cagtggattctagaaacaggcactattgcattctgcgtagactgtgttttcctatgtgcc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cagtggattctagaaacaggcactattgcgttctgcgtagactgtgttttcctatgtgcc 260
Query: 61 tggcgaatgtcatgccagagttaatgtgggcaggtagtgtttatatggcatggacacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcgaatgtcatgccagagttaatgtgggcaggtagtgtttatatggcatggacacaaa 320
Query: 121 agatgttgagatagtgctcattccaggcaagatgggtctgtgttccattatgatgctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgttgagatagtgctcattccaggcaagatgggtctgtgttccattatgatgctgag 380
Query: 181 aacagagcatgggtaaaatcttggcattgtgtagttctgtaatagtttaacatttggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagagcatgggtaaaatcttggcattgtgtagttctgtaatagtttaacatttggcct 440
Query: 241 gtggttattatctgtaaatgaaaccacagaacatgaagctgcatgaaagcgcactgtgcc 300
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gtggttattaactgtaaatgaaaccacagaacatgaagctgcatgaaagggcactgtgcc 500
Query: 301 aagtgtctttctcagtctcctggctaaacacagtggtcagtgttaatgcctcttccatac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aagtgtctttctcagtctcctggctaaacacagtggtcagtgttgatgcctcttccatac 560
Query: 361 atacagagatcagagtgagcagagggagagggaccagcagggccatgctgaggttgtcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacagagatcagagtgagcagagggagagggaccagcagggccatgctgaggttgtcac 620
Query: 421 acacaggaagagactgtagccagtctgtgttgtttggagatggggtccgcttgccttagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaggaagagactgtagccagtctgtgttgtttggagatggggtccgcttgccttagt 680
Query: 481 cttcagagtgctgggattatagatgcattaccatatctacctccattctgaatcttgact 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 681 cttcagagtgctgggattatagatgcattaccatacctacctccattctgaatcttggct 740
Query: 541 ccctgaagaccacagaactcagtaagtttctgagtgtcagtgtgggtggggcatgtataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctgaagaccacagaactcagtaagtttctgagtgtcagtgtgggtggggcatgtataa 800
Query: 601 ctgagtccaaaggtgggacaagggaatccatattcttattttacatttcaacctgcatcc 660
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttagtccaaaggtggaacaagagaatccatattcttattttacatttcaacctgcatcc 860
Query: 661 atccccctattgtattttaataaagcatttctca 694
||||||||||||||||||||||||||||||||||
Sbjct: 861 atccccctattgtattttaataaagcatttctca 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
