BAC Information

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BAC

Clone NameMSMg01-487M10
Chromosome19 (Build37)
Map Location 8,242,689 - 8,243,230
singlet/doubletsinglet
Overlap geneD630002G06Rik
Upstream geneD930010J01Rik, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705
Downstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487M10.T7 (MSMg01no487_m10.b1)MSMg01-487M10.TJ (MSMg01no487_m10.g1)
ACCAG566657AG566658
length756744
length of high quality
(start - end)
542 (128 - 669)549 (76 - 624)
definitionCHROMAT_FILE: MSMg01no487_m10.b1 PHD_FILE: MSMg01no487_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:29 2005CHROMAT_FILE: MSMg01no487_m10.g1 PHD_FILE: MSMg01no487_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCACTCXXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCCGACCTGCGC
GGNAANCACNCTGTTTTCCAAAAAGGCGGCGAACTCAGAAATCCACCTGC
CTCTGCCTCCCAAGTGCTGTTATTCCAGGTGTGTCCCACCACTGCCTGGC
TGTAGGTTGTAATTTGAAGTGTCAAAAGCCCATCCCAGGCCAGTCTCTCT
CTTGGACTATGAATCAGGTTTTAAATATTAATTGCTTTACCAGATCCCTG
CTTTCCTGTGGCCATTTTCCTTGTGAAAATAGTGAACTAGATCACTGAAA
TATTAAGCAAACCTCTTTTAATTGCTTTATTTTATGAGACTTTCCATTAA
TCATGGTGTTTCTTCACAGAAATAGAACAGTGAATGAGACAAAGAGAGAG
AAAAACTGAGAGTTCAAGGCCCATCACATCATGTGATTTTAAAAAATATA
TTACAATACTGCATTTTAGTAAACTTAGTTGAGCACATGGGTACCACTAC
TTATTAATTGTATGTACATAACTTAGTCTTGAGATTTTTAGTATTCAGTC
TACTTGTTCTTCTCTGCACATCTGCTATATTCTAACACAACTAAAAATGA
TTTTCTTGAATAGCAACCCAAGTGGCATAGCACATACAGTTGGTTAGACT
TATTTGTGCAATCTTGGAGATAATTATAAGGGCTAAAACATATGTGGCTA
GAATAACAAAATATAATGACCNAAAATGAATAATCTATAGTGGGAATAAA
TGACAC
CCGATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATGACTGCTTCTATTTCCTTGGG
GTTATGGGACTGTTTAGATGATTTATCTGATCCTGATTTAACCTTTGTTC
CTAGTATCTGTCTAGAAAATCACCCATTTCATATAGGTTTTTCTGTTTTG
TTGAGTGTAAACTTGTAGTAGGATCTGATGGTTTTTTTTTTTTAATTTCC
TCGAGTTTTGTTCTCATGTCTCCCTATTCATTCCCGATTTTTTAAAATTT
GGATACTGTCTCTGTGCCCTCTGGTTAGTCTGGCTAAGGGTTTATCTGTC
TTGTTAATTTTTTCAAAGAACCAGTTCCTAGTTTTGTTGATTCTTTTTCT
AGTTTTCTTTCTTTCTACATGATGGATTTCAGCCCTGAGTTTGATTATTT
CCTGCCATCGACTCTTCTTGGGTGTATTTGCTTCTTTTTGTTCTAGAGTT
TTCAGATGTGCTGTTAAGCTGCTAGTGTATGCTTTTTCCAGTTTCTTTAT
GGAGGCACTCAGGGCTATGAATTTTGCTCTTAACACTGCTTTCATTGTGT
CCCATAAGTTTTGGTATGTTGTGCCCTCATTTTCATTGAATTCTAAAAAG
TCTTTAATTTCTTTATTTCTTCCCTCATCAAGTTATTATTGAGTAAATAG
TTGTTCAAGTTCCACATGTATGTGAGCCCTGTGTTATTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_m10.b1 MSMg01no487_m10.b1 CHROMAT_FILE:
MSMg01no487_m10.b1 PHD_FILE: MSMg01no487_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:29 2005
         (542 letters)



>mm_chr19_8242489_8243430
          Length = 942

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtgtcccaccactgcctggctgtaggttgtaatttgaagtgtcaaaagcccatccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtgtcccaccactgcctggctgtaggttgtaatttgaagtgtcaaaagcccatccca 260

                                                                       
Query: 61  ggccagtctctctcttggactatgaatcaggttttaaatattaattgctttaccagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagtctctctcttggactatgaatcaggttttaaatattaattgctttaccagatcc 320

                                                                       
Query: 121 ctgctttcctgtggccattttccttgtgaaaatagtgaactagatcactgaaatattaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctttcctgtggccattttccttgtgaaaatagtgaactagatcactgaaatattaag 380

                                                                       
Query: 181 caaacctcttttaattgctttattttatgagactttccattaatcatggtgtttcttcac 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacctcttttaagtgctttattttatgagactttccattaatcatggtgtttcttcac 440

                                                                       
Query: 241 agaaatagaacagtgaatgagacaaagagagagaaaaactgagagttcaaggcccatcac 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||
Sbjct: 441 agaaatagaacagtgaatgagacaaagagagagaaaaactgacagttcaagggttatcac 500

                                                                       
Query: 301 atcatgtgattttaaaaaatatattacaatactgcattttagtaaacttagttgagcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatgtgattttaaaaaatatattacaatactgcattttagtaaacttagttgagcaca 560

                                                                       
Query: 361 tgggtaccactacttattaattgtatgtacataacttagtcttgagatttttagtattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggtaccactacttattaattgtatgtacataacttagtcttgagatttttagtattca 620

                                                                       
Query: 421 gtctacttgttcttctctgcacatctgctatattctaacacaactaaaaatgattttctt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctacttgttcttctctgcacatttgctatattctaacacaactaaaaatgattttctt 680

                                                                       
Query: 481 gaatagcaacccaagtggcatagcacatacagttggttagacttatttgtgcaatcttgg 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattagcaacccaagtggcatagcacatacagttggttagacttatttgtgcaatcttgg 740

             
Query: 541 ag 542
           ||
Sbjct: 741 ag 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)