BAC Information

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BAC

Clone NameMSMg01-488J07
Chromosome19 (Build37)
Map Location 40,828,886 - 40,974,323
singlet/doubletdoublet
Overlap geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518
Upstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720
Downstream geneBlnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488J07.T7 (MSMg01no488_j07.b1)MSMg01-488J07.TJ (MSMg01no488_j07.g1)
ACCAG567270AG567271
length705734
length of high quality
(start - end)		668 (33 - 700)650 (77 - 726)
definitionCHROMAT_FILE: MSMg01no488_j07.b1 PHD_FILE: MSMg01no488_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:33 2005CHROMAT_FILE: MSMg01no488_j07.g1 PHD_FILE: MSMg01no488_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,973,659 - 40,974,323)(40,828,886 - 40,829,535)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTTCGC
AACTACAGGGGATGGCACTGATACTAGCAGGTAAACAAATCTGTGAGTGC
TTGTGGAACAAAATGTCTCATTAGGTTTACCTACAGGCCAAATTTGGCTA
ATAGCCAGTTTCATAAAATTTCACTGGAAACACAAGCCCAAGACACACTT
GCTCTTCTACATATTGTCTATGACTACCTTTCATATTCCAATGACAGCTT
GATAGCAGTTAACAGAAGCCATATGACCACAAAGCCTAAGATATTTACTA
TCTTCATTTACAAGAGTAGTCTGCAAACCCTGGTTAACAATCTTAAACTG
TTAATCTTAAATTTGAAAGTCAGATAATTTGGCAAAAAAGACATGATCTT
AAGCAACACCAATATCTAATAAACAGGTCATAAATTAACTTTTATGTCTT
TCTTAGTACTCAGCTCCAGATGAATTTCTTTTTTCTTTTCCTTTCCTTTT
GTTGGAGACAGAGGCTTACCGTGTGGCCCTGGCTACCTGGAACACACTAT
ATAAACCAGGCTGGCCTGGAGCTCAGAGCCTTCTGACTCTGCCTCCTAAG
CATGGGATTAAAGACATGTCCCAGCATGCTCTCCAAGAGATGTAAGTGAG
CAAATATTTACTTAAATTTCATTTCTTACCTTGTGTATCTATTTTGTTAC
CTAAN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCTTTTTGTTCTTTTTAAATG
TGTATGTGTGTTTTGCCTACAAATATGTCTTGTGGACCATTTGCATGCAC
TGCCCAGAGAGGCCAGAAGGGGGCACTGGATGCCTGGAGAACTAGAGTTA
AAGACTATTGTGAGCTGCCATGTGGGCACTGGGAAATCAAACCTGGGTCT
TCTGGAAGAACAGCCCACGCTCTTGACTGCTGAGCCATCTCTCCTGCCCT
TACTATGCTTTTTAGTCCTATCATAACAGCCTTGTTTTAATAACATGGTT
TCTCATTCTTCTTTATTTAGAAAGTGAAAATAAAAGAGTCGTCATGAAAA
AAATTTCAAAAAGAAGAGAAGAGATTTTTAAAAAGGTAAAGTATTAATGA
AATTGGTGGGTGGCTTTTAAAAATCCAAGTTTTTATAGCATTTTACCAGG
ATGTGTGATTCCCTGAAAACTGTTCATTTGCATTCCCTTCCTTTTATGCT
CTCGGTTATACACTCTGAATTTTAAGCAGTTTGTAAACAACTCAGATACA
TTAGCATTGAACAATAGTAGGCTTACAGGGTTTCAGCTGCTGTCAATTGC
AAGTTTCTTCTATGATGTGACAAAAGGAATTATTTTGATCCTTTTGTATT
TGCCAAGACTTTAGTGAGCTAAGAACAGAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_j07.b1 MSMg01no488_j07.b1 CHROMAT_FILE:
MSMg01no488_j07.b1 PHD_FILE: MSMg01no488_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:33 2005
         (668 letters)



>mm_chr19_40973367_40974434
          Length = 1068

 Score = 1224 bits (633), Expect = 0.0
 Identities = 657/665 (98%), Gaps = 1/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcttc-gcaactacaggggatggcactgatactagcaggtaaacaaatctgtg 63
           |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 gaattcctctacagtaactacaggggatggcactgatactagcaggtaaacaaatctgtg 898

                                                                       
Query: 64  agtgcttgtggaacaaaatgtctcattaggtttacctacaggccaaatttggctaatagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agtgcttgtggaacaaaatgtctcattaggtttacctacaggccaaatttggctaatagc 838

                                                                       
Query: 124 cagtttcataaaatttcactggaaacacaagcccaagacacacttgctcttctacatatt 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 837 cagtttcataaaatttcactggaaacacaagcccaagacatacttgctcttctacatatt 778

                                                                       
Query: 184 gtctatgactacctttcatattccaatgacagcttgatagcagttaacagaagccatatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gtctatgactacctttcatattccaatgacagcttgatagcagttaacagaagccatatg 718

                                                                       
Query: 244 accacaaagcctaagatatttactatcttcatttacaagagtagtctgcaaaccctggtt 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 actacaaagcctaagatatttactatcttcatttacaagagtagtctgcaaaccctggtt 658

                                                                       
Query: 304 aacaatcttaaactgttaatcttaaatttgaaagtcagataatttggcaaaaaagacatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aacaatcttaaactgttaatcttaaatttgaaagtcagataatttggcaaaaaagacatg 598

                                                                       
Query: 364 atcttaagcaacaccaatatctaataaacaggtcataaattaacttttatgtctttctta 423
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atcttaagcaacaccaacatctaataaacaggtcataaattaacttttatgtctttctta 538

                                                                       
Query: 424 gtactcagctccagatgaatttcttttttcttttcctttccttttgttggagacagaggc 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 537 gtactcagctccagatgaatttcttttttcttttccttttcttttgttggagacagaggc 478

                                                                       
Query: 484 ttaccgtgtggccctggctacctggaacacactatataaaccaggctggcctggagctca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttaccgtgtggccctggctacctggaacacactatataaaccaggctggcctggagctca 418

                                                                       
Query: 544 gagccttctgactctgcctcctaagcatgggattaaagacatgtcccagcatgctctcca 603
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 417 gagccttctgactctgcctcctaagtatgggattaaagacatgtcccagcatgctctcca 358

                                                                       
Query: 604 agagatgtaagtgagcaaatatttacttaaatttcatttcttaccttgtgtatctatttt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagatgtaagtgagcaaatatttacttaaatttcatttcttaccttgtgtatctatttt 298

                
Query: 664 gttac 668
           |||||
Sbjct: 297 gttac 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_j07.g1 MSMg01no488_j07.g1 CHROMAT_FILE:
MSMg01no488_j07.g1 PHD_FILE: MSMg01no488_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:33 2005
         (650 letters)



>mm_chr19_40828686_40829735
          Length = 1050

 Score = 1226 bits (634), Expect = 0.0
 Identities = 646/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattctttttgttctttttaaatgtgtatgtgtgttttgcctacaaatatgtcttgtgga 60
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tattctttttgttcttttgaaatgtgtatgtgtgttttgtctacaaatatgtcttgtgga 260

                                                                       
Query: 61  ccatttgcatgcactgcccagagaggccagaagggggcactggatgcctggagaactaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatttgcatgcactgcccagagaggccagaagggggcactggatgcctggagaactaga 320

                                                                       
Query: 121 gttaaagactattgtgagctgccatgtgggcactgggaaatcaaacctgggtcttctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaagactattgtgagctgccatgtgggcactgggaaatcaaacctgggtcttctgga 380

                                                                       
Query: 181 agaacagcccacgctcttgactgctgagccatctctcctgcccttactatgctttttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agaacagcccacgctcttgactgctgagccatctctcctgcccttactatgctttttagc 440

                                                                       
Query: 241 cctatcataacagccttgttttaataacatggtttctcattcttctttatttagaaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatcataacagccttgttttaataacatggtttctcattcttctttatttagaaagtg 500

                                                                       
Query: 301 aaaataaaagagtcgtcatgaaaaaaatttcaaaaagaagagaagagatttttaaaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaataaaagagtcgtcatgaaaaaaatttcaaaaagaagagaagagatttttaaaaagg 560

                                                                       
Query: 361 taaagtattaatgaaattggtgggtggcttttaaaaatccaagtttttatagcattttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagtattaatgaaattggtgggtggcttttaaaaatccaagtttttatagcattttac 620

                                                                       
Query: 421 caggatgtgtgattccctgaaaactgttcatttgcattcccttccttttatgctctcggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggatgtgtgattccctgaaaactgttcatttgcattcccttccttttatgctctcggt 680

                                                                       
Query: 481 tatacactctgaattttaagcagtttgtaaacaactcagatacattagcattgaacaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatacactctgaattttaagcagtttgtaaacaactcagatacattagcattgaacaata 740

                                                                       
Query: 541 gtaggcttacagggtttcagctgctgtcaattgcaagtttcttctatgatgtgacaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaggcttacagggtttcagctgctgtcaattgcaagtttcttctatgatgtgacaaaag 800

                                                             
Query: 601 gaattattttgatccttttgtatttgccaagactttagtgagctaagaac 650
           ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 801 gaattattttgatccttttgtatttgccaaggctttagtgagctaagaac 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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