BAC Information

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BAC

Clone NameMSMg01-488N22
Chromosome19 (Build37)
Map Location 41,608,525 - 41,783,908
singlet/doubletdoublet
Overlap geneLcor, AI606181, Slit1
Upstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352
Downstream geneArhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488N22.T7 (MSMg01no488_n22.b1)MSMg01-488N22.TJ (MSMg01no488_n22.g1)
ACCAG567490AG567491
length710734
length of high quality
(start - end)
277 (20 - 296)654 (70 - 723)
definitionCHROMAT_FILE: MSMg01no488_n22.b1 PHD_FILE: MSMg01no488_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:54 2005CHROMAT_FILE: MSMg01no488_n22.g1 PHD_FILE: MSMg01no488_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,608,525 - 41,608,796)(41,783,480 - 41,783,908)
sequence
GACTCACAATACGGAGTAGATCCGCGGAATTCAACAATACTGCCTTAAGC
AGCTGGGCAACAGGCGGATTTCTGAGCTCAAGGCCAGCCTGGTCTACAAA
GTAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAA
CCGAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTGCCTTAAGCAGTAAGA
CTGTTGCCTGGCCTGAGAACTTGTTCATAGCACTTCCTTATTTCAGAGTG
TTCTAGCCATGCCAGCAACAGGAAAGGTAGTTTCAATCAAGAAATTATAT
TTTTAAGATGATTTCTTTCATCATTGCATTTTTAAGTGATAAAAATATTG
AAGTCATTAATTCTGGAAGGAGGGTTGATTGGTTTTGTCTGTCCTCTATT
ACTAGTTTTTTACGATCCTCATCGAAGTTTTATTTCTATTTCCGTATTTA
TCTTACCAACCCTGACAAATTTAAATATTATTTCAATATTATTTCAACAT
AATTATTTCAATTTATTTATATTACCTTTATCACATTTGTAATTAATTTT
TATATCTTTTATTTTTTTCCATTTACACCTTATCCAATACTTTTTAAGAA
ATTTAACTAACATTAAACATACTAATCGCTTCCCTTCTAACCTCTTTACT
TTTCTTTATAGATAATATTATTTATAACATTTAATAATTATAAATATTTA
AATATATTTN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCACCAAGGAATTCTGCAGGGAAGATTTCTGAGCCGAGATTT
AAATAACTTTATTTATTTTGCTTACAAATTGTGCTCTGTGTGTGTCTGTG
TGTGTGCTGTGTATGTTCATACTTGTGAGTACAAGCATGCACACGTGCAA
ACACAATAAGAATGCTTTTATCATGTTATCAGCCCACACTTCCCACTTTG
TTTGTGGCAGGTCGTCTTGTGTGACTTCATTTCTCGTCGTTACAGGAGCA
GGGGTTACAGACATGTTCTGCCACGTCTGGCTTTTGCATGCATTCTGTGG
ATTTGAACTCTGATCCTCTTACTGGTGTAACAAGCATTGTTTACTGAGCC
ATCTCCCAAGCCCCATTGACATTTTTAGTTGGGAGATTTTTAATTACTGC
TTCAATATGGTTGGCTTGTTATAGACCTGTCTAAATTTTTTTAAAATCTC
ATCTTGGTTTAACGTTGGCAGGTCCTATACACTGGCATAGCGTCACTTTC
TTTTGGATTTTAATGGAATATAATTTTAAGGCATGTCCTTATGATGTATT
GAATTTCTTGGTATCTGTTGTAATGTCTCTATTTCCACTTCCAATTTTAT
TAATCTTGCTCTTCTCTTTTCTCTTTTGGTCAATTTGTCTAATGGCTTCA
CTGATTCTTTGGCTTTTGTTTGTTTGTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_n22.b1 MSMg01no488_n22.b1 CHROMAT_FILE:
MSMg01no488_n22.b1 PHD_FILE: MSMg01no488_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
         (277 letters)



>mm_chr19_41608322_41608998
          Length = 677

 Score =  487 bits (252), Expect = e-142
 Identities = 266/272 (97%), Gaps = 3/272 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcaacaatactgccttaagcagctgggcaacaggcggatttctgagctcaaggcc 66
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcaacaagactgccttaagcagctgggcaacaggcggatttctgagctcaagacc 263

                                                                       
Query: 67  agcctggtctacaaagtaagttccaggacagccagggctacacagagaaaccctgtctcg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcctggtctacaaagtaagttccaggacagccagggctacacagagaaaccctgtctcg 323

                                                                       
Query: 127 aaaaaccgaaaaaaaaaaaaaaaaaaaaaaaaaaa---gactgccttaagcagtaagact 183
           ||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 324 aaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagactgccttaagcagtaagact 383

                                                                       
Query: 184 gttgcctggcctgagaacttgttcatagcacttccttatttcagagtgttctagccatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgcctggcctgagaacttgttcatagcacttccttatttcagagtgttctagccatgc 443

                                           
Query: 244 cagcaacaggaaaggtagtttcaatcaagaaa 275
           ||||||||||||||||||||||||||||||||
Sbjct: 444 cagcaacaggaaaggtagtttcaatcaagaaa 475



 Score =  124 bits (64), Expect = 6e-33
 Identities = 85/92 (92%), Gaps = 2/92 (2%)
 Strand = Plus / Minus

                                                                       
Query: 42  caggcggatttctgagctcaaggccagcctggtctacaaagtaagttccaggacagccag 101
           |||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||||
Sbjct: 651 caggcggatttctgag-ttaacgccagcctggtctacagagtgagttccaggacagccag 593

                                           
Query: 102 ggctacacagagaaaccctgtctcgaaaaacc 133
           |||||||||||| ||||||| |||||||||||
Sbjct: 592 ggctacacagag-aaccctgcctcgaaaaacc 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no488_n22.g1 MSMg01no488_n22.g1 CHROMAT_FILE:
MSMg01no488_n22.g1 PHD_FILE: MSMg01no488_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
         (654 letters)



>mm_chr19_41783480_41784534
          Length = 1055

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%), Gaps = 1/429 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgcagggaagatttctgagccgagatttaaataactttatttattttgcttac-aaa 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 ttctgcagggaagatttctgagccgagatttaaataactttatttattttgcttacaaaa 370

                                                                       
Query: 60  ttgtgctctgtgtgtgtctgtgtgtgtgctgtgtatgttcatacttgtgagtacaagcat 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 ttgtgctctgtgtgtgtctgtgtgtgtgctgtgtatgttcatacttgtgagtacaagcgt 310

                                                                       
Query: 120 gcacacgtgcaaacacaataagaatgcttttatcatgttatcagcccacacttcccactt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcacacgtgcaaacacaataagaatgcttttatcatgttatcagcccacacttcccactt 250

                                                                       
Query: 180 tgtttgtggcaggtcgtcttgtgtgacttcatttctcgtcgttacaggagcaggggttac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtttgtggcaggtcgtcttgtgtgacttcatttctcgtcgttacaggagcaggggttac 190

                                                                       
Query: 240 agacatgttctgccacgtctggcttttgcatgcattctgtggatttgaactctgatcctc 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agacatgtgctgccacgtctggcttttgcatgcattctgtggatttgaactctgatcctc 130

                                                                       
Query: 300 ttactggtgtaacaagcattgtttactgagccatctcccaagccccattgacatttttag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttactggtgtaacaagcattgtttactgagccatctcccaagccccattgacatttttag 70

                                                                       
Query: 360 ttgggagatttttaattactgcttcaatatggttggcttgttatagacctgtctaaattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ttgggagatttttaattactgcttcaatatggttggcttgttatagacctgtctaaattt 10

                    
Query: 420 ttttaaaat 428
           |||| ||||
Sbjct: 9   ttttgaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space:   672980
Effective search space used:   672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)