Query= MSMg01no488_n22.b1 MSMg01no488_n22.b1 CHROMAT_FILE:
MSMg01no488_n22.b1 PHD_FILE: MSMg01no488_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
(277 letters)
>mm_chr19_41608322_41608998
Length = 677
Score = 487 bits (252), Expect = e-142
Identities = 266/272 (97%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 7 ggaattcaacaatactgccttaagcagctgggcaacaggcggatttctgagctcaaggcc 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcaacaagactgccttaagcagctgggcaacaggcggatttctgagctcaagacc 263
Query: 67 agcctggtctacaaagtaagttccaggacagccagggctacacagagaaaccctgtctcg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcctggtctacaaagtaagttccaggacagccagggctacacagagaaaccctgtctcg 323
Query: 127 aaaaaccgaaaaaaaaaaaaaaaaaaaaaaaaaaa---gactgccttaagcagtaagact 183
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 aaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagactgccttaagcagtaagact 383
Query: 184 gttgcctggcctgagaacttgttcatagcacttccttatttcagagtgttctagccatgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgcctggcctgagaacttgttcatagcacttccttatttcagagtgttctagccatgc 443
Query: 244 cagcaacaggaaaggtagtttcaatcaagaaa 275
||||||||||||||||||||||||||||||||
Sbjct: 444 cagcaacaggaaaggtagtttcaatcaagaaa 475
Score = 124 bits (64), Expect = 6e-33
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 42 caggcggatttctgagctcaaggccagcctggtctacaaagtaagttccaggacagccag 101
|||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||||
Sbjct: 651 caggcggatttctgag-ttaacgccagcctggtctacagagtgagttccaggacagccag 593
Query: 102 ggctacacagagaaaccctgtctcgaaaaacc 133
|||||||||||| ||||||| |||||||||||
Sbjct: 592 ggctacacagag-aaccctgcctcgaaaaacc 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no488_n22.g1 MSMg01no488_n22.g1 CHROMAT_FILE:
MSMg01no488_n22.g1 PHD_FILE: MSMg01no488_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
(654 letters)
>mm_chr19_41783480_41784534
Length = 1055
Score = 799 bits (413), Expect = 0.0
Identities = 425/429 (99%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 ttctgcagggaagatttctgagccgagatttaaataactttatttattttgcttac-aaa 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 ttctgcagggaagatttctgagccgagatttaaataactttatttattttgcttacaaaa 370
Query: 60 ttgtgctctgtgtgtgtctgtgtgtgtgctgtgtatgttcatacttgtgagtacaagcat 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 ttgtgctctgtgtgtgtctgtgtgtgtgctgtgtatgttcatacttgtgagtacaagcgt 310
Query: 120 gcacacgtgcaaacacaataagaatgcttttatcatgttatcagcccacacttcccactt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcacacgtgcaaacacaataagaatgcttttatcatgttatcagcccacacttcccactt 250
Query: 180 tgtttgtggcaggtcgtcttgtgtgacttcatttctcgtcgttacaggagcaggggttac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtttgtggcaggtcgtcttgtgtgacttcatttctcgtcgttacaggagcaggggttac 190
Query: 240 agacatgttctgccacgtctggcttttgcatgcattctgtggatttgaactctgatcctc 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agacatgtgctgccacgtctggcttttgcatgcattctgtggatttgaactctgatcctc 130
Query: 300 ttactggtgtaacaagcattgtttactgagccatctcccaagccccattgacatttttag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttactggtgtaacaagcattgtttactgagccatctcccaagccccattgacatttttag 70
Query: 360 ttgggagatttttaattactgcttcaatatggttggcttgttatagacctgtctaaattt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ttgggagatttttaattactgcttcaatatggttggcttgttatagacctgtctaaattt 10
Query: 420 ttttaaaat 428
|||| ||||
Sbjct: 9 ttttgaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|