Query= MSMg01no489_p02.b1 MSMg01no489_p02.b1 CHROMAT_FILE:
MSMg01no489_p02.b1 PHD_FILE: MSMg01no489_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:22 2005
(653 letters)
>mm_chr19_22922576_22923628
Length = 1053
Score = 1143 bits (591), Expect = 0.0
Identities = 641/661 (96%), Gaps = 8/661 (1%)
Strand = Plus / Minus
Query: 1 ggtattgtgctctcagcttgttctttagtctcatctcttgttgactgcacactcactgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ggtattgtgctctcagcttgttctttagtctcatctcttgttgactgcacactcactgtc 935
Query: 61 cgcccttgctaccatcgctatcatcaacagccacaacccatgctcacagaccagatgtcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 agcccttgctaccatcgctatcatcaacagccacaacccatgctcacagaccagatgtcc 875
Query: 121 cac-tgtgtgtgg------t-ctcctttttcaagactctagtggttttgggttttcagcc 172
||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 874 cacttgtgtgtgggcagcctgctcctttttcaagactctagtggttttggattttcagcc 815
Query: 173 tttgtccattacatttcttcttagtggacgccccttcccttttcttggtcaactaactat 232
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 814 tttgtccattacatttcttcttagtggactcccattcccttttcttggtcaactaactat 755
Query: 233 aagtggtctcccactccatacaaacaaccttaggaagctttgctatacaccgaggagtaa 292
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 754 aagtggtctcccactccatacaaaccaccttaggaagcttttctatacaccgaggagtaa 695
Query: 293 ccctcacctttgctttgtgctcctcgtattctgtgaggctttgcaggactccactttctg 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctctcacctttgctttgtgctcctcgtattctgtgaggctttgcaggactccactttctg 635
Query: 353 cctgccacttttcctatacacacacttttctttgtataagcaagatactcatctccagga 412
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 634 cctgccacttttcctacacacacacttttctttgtataaacaagatactcatctccagga 575
Query: 413 aatcgtcctggtccttgctcggtaaacatttgttgagtggataaaatatcaccaaatgct 472
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aatcgtcctggtccttgctcagtaaacatttgttgagtggataaaatatcaccaaatgct 515
Query: 473 tgggtttaaaagactgatttaaagaagatggaaaatttaaagagaagtaggctatgcctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgggtttaaaagactgatttaaagaagatggaaaatttaaagagaagtaggctatgcctc 455
Query: 533 acaagtgttaagaatcaattttagcccaagagtctattggatgctgtgctattgttgagg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acaagtgttaagaatcaattttagcccaagagtctattggatgctgtgctattgttgagg 395
Query: 593 gactaaatgggtattgtgtaaagaagggtgggcgtatgactcataatcattgtttaccga 652
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 394 gactaaatgggtattgtgtaaaggagggtgggtgtatgactcataatcattgtttaccga 335
Query: 653 g 653
|
Sbjct: 334 g 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_p02.g1 MSMg01no489_p02.g1 CHROMAT_FILE:
MSMg01no489_p02.g1 PHD_FILE: MSMg01no489_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:22 2005
(648 letters)
>mm_chr19_22852682_22853729
Length = 1048
Score = 1071 bits (554), Expect = 0.0
Identities = 622/645 (96%), Gaps = 2/645 (0%)
Strand = Plus / Plus
Query: 5 ctaagtaccccttgaaaaagaaagccagaaactgaggctaagtcttagaaatgaatctga 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctaagtaccccttgaaagagaaagccagaaactgaggctaagtcttagaaatgaatctga 264
Query: 65 ttgggcttaatgatgaagcagttcagacttgcagagggggttaaactccacaccatttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggcttaatgatgaagcagttcagacttgcagagggggttaaactccacaccatttct 324
Query: 125 ttcgtttttcccagaggcctgaagtctaggccagcacaaagacaaagggacaaaaacctg 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 ttcgtttttcccagaggcctgaagtctaggccagcacgaagacaaagggacaaaaacctg 384
Query: 185 cacacaaagcacgtagctatttgttcattctgcaagtccacaaatgcttctccaaatatt 244
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 cacacaaagcaagtagctatttgttcattctgcaagtccacaaatgcttctccaaagctc 444
Query: 245 ctcaaaccatgcactcagctagaaccagaagtatgtgaggaagcaaccattgctttcaag 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 ctcaaaccatgcactcagctagaaccagaagtatgtgaggaagcaactattgctttcaag 504
Query: 305 aattcataatctaccaaaggaaactagcatttccacacagcatcgagtacagtagctaat 364
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 aattcataatctactaaaggaaactagtgtttccacacagcatcgagtacagtagctaat 564
Query: 365 gtcaagagcttccagagcatctaatgagtagtaatcagggattttcacacaggaggtggc 424
|||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 565 gtcaagagcttccagaccatctaatgagtaaaaatcagagatttttacacaggaggtggc 624
Query: 425 ttcaactgaggtttaaatgggcgttgagcaatacattcagaaacggaaaccattccttgc 484
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 ttcaactgaggtttaagtaggcgttgagcaatacattcagaaatggaaaccattccttgc 684
Query: 485 agtagacagaacaagttcgagggcacagaggcatacaagacaccagttggcttgagagat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtagacagaacaagttcgagggcacagaggcatacaagacaccagttggcttgagagat 744
Query: 545 tctatatttatgggaaatatatacagg-aatatatatgggaaatacataagacagcctag 603
||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 745 tctgtatttatgggaaatatata-agggaatatatatggaaaatacataagacagcctag 803
Query: 604 attangagagagagcacagataatcttaaatgagatgtgcagagt 648
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attaggagagagagcacagataatcttaaatgagatgtgcagagt 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
