Query= MSMg01no491_m07.b1 MSMg01no491_m07.b1 CHROMAT_FILE:
MSMg01no491_m07.b1 PHD_FILE: MSMg01no491_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:46 2005
(289 letters)
>mm_chr19_60933608_60934296
Length = 689
Score = 507 bits (262), Expect = e-148
Identities = 282/296 (95%), Gaps = 13/296 (4%)
Strand = Plus / Plus
Query: 1 tgccaagtgctgagaataaaggtgtgtgtcactactgcccatcttccatgggatgtcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccaagtgctgagaataaaggtgtgtgtcactactgcccatcttccatgggatgtcttg 260
Query: 61 agggactaatatttatgaatttgagaaactctttatgcagcaagataggtaaaaaaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggactaatatttatgaatttgagaaactctttatgcagcaagataggtaaaaaaatac 320
Query: 121 ttggtctgagctcactggtgggaatacaaccccatagcaggaacagcagggccacctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtctgagctcactggtgggaatacaaccccatagcaggaacagcagggccacctcta 380
Query: 181 tgctgggggccatgcagctgcaaaagcatctcctgcatgaggacctaattgaggactgcc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tgctgggggccatgcagctgcaaaagcatctcctgcaggaggacctaattgaggactgcc 440
Query: 241 tgaaattttttga-------ttgctggtgcaataatcagccaatcaggaactgctg 289
||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaa------gaccaaggattgctggtgcaataatcagccaatcaggaactgctg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no491_m07.g1 MSMg01no491_m07.g1 CHROMAT_FILE:
MSMg01no491_m07.g1 PHD_FILE: MSMg01no491_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:46 2005
(530 letters)
>mm_chr19_61133393_61134322
Length = 930
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Minus
Query: 1 aattttcttttaaggcaaaactgatatatttctggataactttcagaggataagacagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aattttcttttaaggcaaaactgatatatttctggataactttcagaggataagacagcc 671
Query: 61 tacaagaacccaggtgataaagtgaaggtaaggaagagcctggagcaagacccactgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tacaagaacccaggtgataaagtgaaggtaaggaagagcctggagcaagacccactgact 611
Query: 121 tggctacagggacccaggtgtccctttgggtcagcaaagtagaagcacagaacccttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggctacagggacccaggtgtccctttgggtcagcaaagtagaagcacagaacccttgag 551
Query: 181 aaatagccatggtctcagagggagaacactcaccgggctcaagagatcacattttcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaatagccatggtctcagagggagaacactcaccgggctcaagagatcacattttcttgg 491
Query: 241 cttttcaagtggcttctcagaaatcaggatgaaagactcttgagcaataggaagagagac 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttttcaagtggcttcacagaaatcaggatgaaagactcttgagcaataggaagagagac 431
Query: 301 agagaacattttaaacagcactggaatttaaccattggcgctgggagctggatagctcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agagaacattttaaacagcactggaatttaaccattggcgctgggagctggatagctcta 371
Query: 361 atgagaagaaaaggaaatcacagtaaccctgacccagaccttgaccctttacgtcagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgagaagaaaaggaaatcacagtaaccctgacccagaccttgaccctttacgtcagaag 311
Query: 421 caaaagaggataattaatgaaaatgcagtgtgcccagacatgggataggaggccagctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caaaagaggataattaatgaaaatgcagtgtgcccagacatgggataggaggccagctga 251
Query: 481 gctctgtcaatttgataatccccagttgtgacctgtgaaccaaagtgtgc 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctctgtcaatttgataatccccagttgtgacctgtgaaccaaagtgtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
