BAC Information

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BAC

Clone NameMSMg01-493F04
Chromosome19 (Build37)
Map Location 10,935,973 - 10,936,590
singlet/doubletsinglet
Overlap geneTmem132a
Upstream geneIncenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3
Downstream geneTmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493F04.T7 (MSMg01no493_f04.b1)MSMg01-493F04.TJ (MSMg01no493_f04.g1)
ACCAG570870AG570871
length762758
length of high quality
(start - end)		698 (43 - 740)618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no493_f04.b1 PHD_FILE: MSMg01no493_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:48 2005CHROMAT_FILE: MSMg01no493_f04.g1 PHD_FILE: MSMg01no493_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAACCCCTTAGTTATGCAAA
CTTGTACTTTCCCTGCCCCGCTCTCCCCCCTTGAGTTTTTCCTATATAAG
CCTGTGAAAAATTTGGCTCGAGGTCGATTCTCCTCTACACCATACTAGGT
GCATGAGTTTCGACCCCAGAGCTCTGGTCTATGTGCTTTCTTGCTGTTGC
TTTATTAAATCTTACCCTCAACATTTTGAGTTCGGTCTCAGTGTCTTCTT
GGGTCCGCGGCTGTCCCGAGGCTTGAGTGAGGGTCTCCCTTCGGGGGTCT
TTCAATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCAGAC
CAATTTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTACTTGCT
AACTGAATCCAAGAACACACCAAAACAATCATCCATCCTGACCAAGTAGG
TTTCATCCCAGGGATGCAGGGATAGTTCAATATACGGAAATCCATCAGTG
TAATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG
TTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAA
AGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAG
CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTG
GAAGCAATCCCN

TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAAGCCCTGTGTCCTATGCGCTCCTG
CAGGCGGGTCTGTACTCACCCTTCGGCTGAGCCTGGGACCCTCCAGCCTC
GGATTTGTTCCAGAGTGGTGTCAGTCAGCTCAATGCGCAAGGGCAGGAGT
GGGGCCCATACAGTCAGCTTTAGTGAGGCCCGAAGTCGGCGCCACCAGAA
GTCCACCCTCACCCCCTTGGCACCCCGGCTCTCCTGGCCAGCCACGAACA
CAGCATCACAGGCCTCAGATACCTATGGCAAGGCAGAGATGTGTGGAGAC
ACAAATGATAGGCACTGATACAGCATCACCTACTCCAGCTATAAGCAGGG
CTACAAAATTCAAATTCAGCTCTGATATCATAAATACATGTTGTGTGGTG
GTCTGGACGGGGTGGGGGGAGGTACTCTTAGCTTAAAGTATTTTGCTGTA
CTACCAAAATCCACTCCAGGGGCGTTACTGTAGGTTCCCCAAGGGATGAG
CTGGGCCATTTGCATGCAACATACATGCTAGCAGGGTCCTCCTAGCAGGG
TCTGGGTTGAACTCACAACTTTAGCTCCTCGGTGCCAATCTCAGACATTG
GTGCTGGAGGCACCTAACAGCCAGCGGTAGCTGTAGCTAAGTACTTGATG
GCAGAGGGGCTAGACAGACCCACCTATCCCTCCAGAAGCCCCCAGGTGCT
GTCACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_f04.g1 MSMg01no493_f04.g1 CHROMAT_FILE:
MSMg01no493_f04.g1 PHD_FILE: MSMg01no493_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:48 2005
         (618 letters)



>mm_chr19_10935773_10936790
          Length = 1018

 Score = 1172 bits (606), Expect = 0.0
 Identities = 615/618 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagccctgtgtcctatgcgctcctgcaggcgggtctgtactcacccttcggctgagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actaagccctgtgtcctatgcgctcctgcaggcgggtctgtactcacccttctgctgagc 260

                                                                       
Query: 61  ctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatgcgcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatgcgcaagg 320

                                                                       
Query: 121 gcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccaccagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccaccagaagt 380

                                                                       
Query: 181 ccaccctcacccccttggcaccccggctctcctggccagccacgaacacagcatcacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccctcacccccttggcaccccggctctcctggccagccacgaacacagcatcacagg 440

                                                                       
Query: 241 cctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcactgataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcactgataca 500

                                                                       
Query: 301 gcatcacctactccagctataagcagggctacaaaattcaaattcagctctgatatcata 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgtcacctactccagctataagcagggctacaaaattcaaattcagctctgatatcata 560

                                                                       
Query: 361 aatacatgttgtgtggtggtctggacggggtggggggaggtactcttagcttaaagtatt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aatacatgttgtgtggtggtctggacggggtggggggaggtgctcttagcttaaagtatt 620

                                                                       
Query: 421 ttgctgtactaccaaaatccactccaggggcgttactgtaggttccccaagggatgagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctgtactaccaaaatccactccaggggcgttactgtaggttccccaagggatgagct 680

                                                                       
Query: 481 gggccatttgcatgcaacatacatgctagcagggtcctcctagcagggtctgggttgaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggccatttgcatgcaacatacatgctagcagggtcctcctagcagggtctgggttgaac 740

                                                                       
Query: 541 tcacaactttagctcctcggtgccaatctcagacattggtgctggaggcacctaacagcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcacaactttagctcctcggtgccaatctcagacattggtgctggaggcacctaacagcc 800

                             
Query: 601 agcggtagctgtagctaa 618
           ||||||||||||||||||
Sbjct: 801 agcggtagctgtagctaa 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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