Query= MSMg01no493_l06.b1 MSMg01no493_l06.b1 CHROMAT_FILE:
MSMg01no493_l06.b1 PHD_FILE: MSMg01no493_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:21 2005
(691 letters)
>mm_chr19_29254241_29255331
Length = 1091
Score = 1230 bits (636), Expect = 0.0
Identities = 678/698 (97%), Gaps = 12/698 (1%)
Strand = Plus / Plus
Query: 5 gaattcaatctagaatagacagtagcagatttgggagagcctcagcagttaaaagtgatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcaatctagaatagacagtagcagatttgggagagcctcagcagttaaaagtgatt 254
Query: 65 gctactgagcccagtgacctgagttccatcctcaggagatataaggagagaactgaatcc 124
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 255 gctactgagcccagtgacctgagttccatcctcaggagacataaggagagaactaaatct 314
Query: 125 ctcaggttgtcccctgact----------caccatggctcacacaacccacaccaaaaaa 174
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 ctcaggttgtcccctgacttccacatactcaccatggctcacacaacccacaccaaaaaa 374
Query: 175 acattaagagaaaagatttacagcagacaagagctctcaatcacctgacagtcttgtgag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acattaagagaaaagatttacagcagacaagagctctcaatcacctgacagtcttgtgag 434
Query: 235 tcttcaaagcttgcatgaagttgcacatacatgcagactgaaaccaacatacatgcatga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcttcaaagcttgcatgaagttgcacatacatgcagactgaaaccaacatacatgcatga 494
Query: 295 ttaaaccttcagggaaatgttttgtgatatcccatttagttgtgcaatactggacgcacc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttaaaccttcagggaaatgttttgtgatatcccatttagttgtgcaatactggacgcacc 554
Query: 355 acaaatcttgtctccacagtaattctcggtgtttattctggcatgctatcactaccaaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acaaatcttgtctccacagtaattctcggtgtttattctggcatgctatcactaccaaag 614
Query: 415 atgtgaagggaaaaaagagccctacttacttctgaaatcaatgataaatgtacaatttta 474
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct: 615 atgtgaagggaaaaaagagccctgctcacttctgaaatcaatgataaatgtgcaatttta 674
Query: 475 tcgtggagaaaattgggatggtagggctgaaatccccgaatct-ggtgcttcccagtaat 533
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 675 tcgtggagaaaattgggatggtagggctgaaatccccaaa-cttggtgcttcccagtaat 733
Query: 534 tcatgagcaaccagaagtcatgagtggttccctaatgggaagaaagtggttggggttact 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcatgagcaaccagaagtcatgagtggttccctaatgggaagaaagtggttggggttact 793
Query: 594 gaccacaaaagtaaactttgagcatttccagtatttacttccttaaattgggttccatct 653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 794 gaccacaaaagtaaactttgagcgtttccagtatttacttccttaaattgggttccatct 853
Query: 654 cagaaagattcactcttaccagcaccaatggcaggctc 691
||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cagaaagattcactcttaccagcaccaatggcaggctc 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_l06.g1 MSMg01no493_l06.g1 CHROMAT_FILE:
MSMg01no493_l06.g1 PHD_FILE: MSMg01no493_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:21 2005
(670 letters)
>mm_chr19_29282295_29283364
Length = 1070
Score = 839 bits (434), Expect = 0.0
Identities = 443/446 (99%)
Strand = Plus / Minus
Query: 225 ttctgagctgccagaaaattctcagcaaacacagcagagcccaattacagagtgcactca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ttctgagctgccagaaaattctcagcaaacacagcagagcccaattacagagtgcactca 1011
Query: 285 gctcggccaagctcccttcctcccacaggccaaattggtttgcagagaagtgggtaggga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gctcggccaagctcccttcctcccacaggccaaattggtttgcagagaagtgggtaggga 951
Query: 345 gcagccttttacccttaaagaagggaggtaacaggagaatagaggaactgctcctaggga 404
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 950 gcagccttttacccttaaagaagggaggtaacaggagaatagaggaaccactcctaggga 891
Query: 405 aggtgaaggcaaagtcggggtggccagccagcgtgacagaaaacaggtgataatccggag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aggtgaaggcaaagtcggggtggccagccagcgtgacagaaaacaggtgataatccggag 831
Query: 465 gataactatttatgatctatgtatgcaaaggccgctgagaggggcgagcatagagaagac 524
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gataactatttatgatctatgcatgcaaaggccgctgagaggggcgagcatagagaagac 771
Query: 525 cgtgaaaaaaatcagtcataaagataatggcctctggtcacaccgtgggacctggagatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cgtgaaaaaaatcagtcataaagataatggcctctggtcacaccgtgggacctggagatg 711
Query: 585 gctcttgttgcaagatgagggagttttattttttacagataggaatagtctccatggagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gctcttgttgcaagatgagggagttttattttttacagataggaatagtctccatggagg 651
Query: 645 gaagctaaagacaataggcaagctga 670
||||||||||||||||||||||||||
Sbjct: 650 gaagctaaagacaataggcaagctga 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
