BAC Information

Click to search

BAC

Clone NameMSMg01-494A15
Chromosome19 (Build37)
Map Location 15,308,661 - 15,308,806
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497
Downstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494A15.T7 (MSMg01no494_a15.b1)MSMg01-494A15.TJ (MSMg01no494_a15.g1)
ACCAG571413AG571414
length782722
length of high quality
(start - end)
90 (211 - 300)152 (63 - 214)
definitionCHROMAT_FILE: MSMg01no494_a15.b1 PHD_FILE: MSMg01no494_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:47 2005CHROMAT_FILE: MSMg01no494_a15.g1 PHD_FILE: MSMg01no494_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAT
TTTCAGGCTCCTTACTATGAAAATGTCACCTTGTACATTTTAATGATTGA
AGTCTGTGATACCCCTGGCTGAAACAGCAGATACANTCAGTACCACATGG
GCTATCTCATGGTCCATAGTCCCCTACTCATATCTNAATATTGGCATAAA
TANTGATNNTAGAGATTAGTTTTTGGTTTTCATACCACAGTTATTTCTAC
ATCCTTATGAGCTACATGTTAAGCCATAGTCCCTACTCATATCTAATATT
GCATNAATATCATTAGAGATTAGTTTTTGTTTTCATATCACAGTTATTTC
TACATTCTTATGAGCTGATGCTAAGCTCAGTTCATTTTGAAATTAAGGCA
TCCGTATTAGGGAGAAATATTTAAGCCCGAAAAGGGGGTTTTTGGTTTTT
ACCCCCCAAGGGGGGGGGGGGGGCCCCCTTTTTTTGTATAATACCAACCA
CCCCCCCAAAAAAAAAAAAAGGGGNNTTTTTTGTTCGCCCGCCCCTCTCT
TGCTGGTGGGGNGCCNNNNNNAATCCANTATTTTCATATATTTTTTTTAT
ATCTCTTTTTANTTTTATGTGGCGCGGGGGGCGGCCGGGCCCCTGTTCTT
TCTCTCTCCCCAAAAAAAAAAAAAATATGGTTTTTCTTTTTTTTCTTCTC
TCTTCCCTGACCGGTGCGCGGTGTGTGTGTTTGTTTTCACTCCTCTCCCT
CTACCACCCGTCGTCGTGGTTGGTGGGGTGGT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCACTTTTACCTTTTTTCCTTTTCTTCAACTAAGTTTT
GTAAACTATGAAATGTAATTCTTCAGTTGGTCCAGTATATTTTGATATTA
TGTTCTTTAATGTGAAATGCCTTAATGATATATATATATATATATATATA
TATAAACTCTTTTCATTTACTCTTTGAAATACCCCACAAAAAAACTTCCT
ATTTGATATATTCAAATGTAGATTTTTTGCGCCCATGGATGTATCTGGGG
GTTATTATGTGTCTGTTATCAAGTCAGATCTATACAACTCTGAANNNNNN
NNNNNNNNNTGTTAGAAGAGATCAATTCCTGAAAGTTTTCCTCTATCCNT
CAACATGTGCTGCAATGTGTGTGTTTGTGTGTGTGCGTGTGTTTTTTGAT
GCAATAATTTATTTTAAAATAAAAAAATAATTACTTTAGTTTTCAGGNGG
GGGGNTGGTTTTCTTTTTTTCCCAATGGGGAAAACCCGCTTTGGTTTTTG
GTGGAAAAAAAAATGTTCCTTTTTAAGTTCTAAAAAATCTTTTTTAGGTA
ACCCCNANNNCNNNNNNNTTCTTGGGGGGGGAAAAATAATTATTTGTAAA
TTCACTCTTTTCTCTTTTTTGTTTTTCCGAAATTATATAATCGCATTTAC
AAAATTTTTTTCTTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_a15.g1 MSMg01no494_a15.g1 CHROMAT_FILE:
MSMg01no494_a15.g1 PHD_FILE: MSMg01no494_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:47 2005
         (152 letters)



>mm_chr19_15308488_15309043
          Length = 556

 Score =  248 bits (128), Expect = 2e-70
 Identities = 140/146 (95%), Gaps = 4/146 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacttttaccttttttccttttcttcaact----aagttttgtaaactatgaaatgtaa 56
           ||||||| |||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 319 ccactttcaccttttttccttttcttcaactatacaagttttgtaaactatgaaatgtaa 260

                                                                       
Query: 57  ttcttcagttggtccagtatattttgatattatgttctttaatgtgaaatgccttaatga 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcttcagttggtccagtatattttgatattatgttctttaatgtgaaatgccttaatga 200

                                     
Query: 117 tatatatatatatatatatatatata 142
           |||||||||||||||| |||||||||
Sbjct: 199 tatatatatatatatacatatatata 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 556
Length adjustment: 8
Effective length of query: 144
Effective length of database: 548
Effective search space:    78912
Effective search space used:    78912
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)