Query= MSMg01no494_a17.b1 MSMg01no494_a17.b1 CHROMAT_FILE:
MSMg01no494_a17.b1 PHD_FILE: MSMg01no494_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:47 2005
(482 letters)
>mm_chr19_40574736_40575616
Length = 881
Score = 847 bits (438), Expect = 0.0
Identities = 468/478 (97%), Gaps = 1/478 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggcttttcggaagtctcctcacaggaagtcagtgctgggtcggccatttatag 64
||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcaggctgttgggaagtctcctcacaggaagtcagtgctggatcggccatttatag 264
Query: 65 gcacgtgcctcatatgcatcactagacttgtttgccctgtgctcccaacatggacgagac 124
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gcacgtgcctcacatgcatcactagacttgtttgccctgtgctcccaacttggacgagac 324
Query: 125 gtgacaccacatccctcacctatatctgaagtgcccgctttgcctgagtggtcccctcct 184
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 atgacgccacatccctcacctatatctgaagtgcccgccttgcctgagtggtcccctcct 384
Query: 185 acctcgtcagagcaaatatacccatcctacctcaataccagaaacacactgctgactgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctcgtcagagcaaatatacccatcctacctcaataccagaaacacactgctgactgcc 444
Query: 245 tgcctgtcaggggacaccaggcccctttctctcccttaacaacacttaattaatgaatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcctgtcaggggacaccaggcccctttctctcccttaacaacacttaattaatgaatga 504
Query: 305 aatagactagagtggtgctgaggtaagaagcccagaccccgcacatgttaggcaactgat 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 aatagactagagtggtgctgaggtaagaagcccagaccccgcacatgctaggcaactgat 564
Query: 365 ctacatctctaaccatgttagatgttgtgcgtgtgcgtgtatgcgatatttacatagccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctacatctctaaccatgttagatgttgtgcgtgtgcgtgtatgcgatatttacatagccc 624
Query: 425 aaactgccctcaaactgcagtccagttctggggttcttgttgtgcactgcacaccagc 482
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 aaactgccctcaaactgcagtccagttctggggttcttgttgtgcactgc-caccagc 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_a17.g1 MSMg01no494_a17.g1 CHROMAT_FILE:
MSMg01no494_a17.g1 PHD_FILE: MSMg01no494_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:47 2005
(235 letters)
>mm_chr19_40771962_40772599
Length = 638
Score = 395 bits (204), Expect = e-114
Identities = 232/250 (92%), Gaps = 15/250 (6%)
Strand = Plus / Minus
Query: 1 catgctggggtcctggttcatcccattgtataaacatgacccagactgagtggtgatggc 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catgctgggaccctggttcatcccattgtataaacatgacccagactgagtggtgatggc 332
Query: 61 tattcaatctctatggggtaacttgatgtcaatgactacaacttcctagtctcaat---c 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 331 tattcaatctctatggggtaacttgatgtcaatgactacaacttcctagtctcaatggcc 272
Query: 118 ttgacccctggtaaactagcccaggctagtttcctgagctgtggattcataat------- 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttgacccctggtaaactagcccaggctagtttcctgagctgtggattcataataccacca 212
Query: 171 -----accactaccaccaccacccaaacacacatatatgcctcggtgttctacaggcaag 225
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ccaccaccaccaccaccaccacccaaacacacatatatgcctcggtgttctacaggcaag 152
Query: 226 cttgaatgtc 235
||||||||||
Sbjct: 151 cttgaatgtc 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 638
Length adjustment: 9
Effective length of query: 226
Effective length of database: 629
Effective search space: 142154
Effective search space used: 142154
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
