BAC Information

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BAC

Clone NameMSMg01-494B05
Chromosome19 (Build37)
Map Location 12,881,798 - 12,882,360
singlet/doubletsinglet
Overlap geneLpxn
Upstream geneStx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf
Downstream geneEG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494B05.T7 (MSMg01no494_b05.b1)MSMg01-494B05.TJ (MSMg01no494_b05.g1)
ACCAG571441AG571442
length404747
length of high quality
(start - end)		75 (132 - 206)579 (66 - 644)
definitionCHROMAT_FILE: MSMg01no494_b05.b1 PHD_FILE: MSMg01no494_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:50 2005CHROMAT_FILE: MSMg01no494_b05.g1 PHD_FILE: MSMg01no494_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNTTTTTTTTTNNNNNNNNNNNNNNNNNNGGGGGGNNNNNNN
NNCCTTATATTGCGGCGCTAAACGACTCCTATTCGAGAGGACCGCGGATT
CTCAACTGTAGAAAATGATTGCCTGAGAAAACCTAAAAAATATTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTC
ACACCANGTCAGAAATGGGCTAAGACCAAAAAATTCAGGGTGAACAGTCA
GATGTCTGGGTTGAGGGATGGTGGAAAAAAAGAAGGGAAACACTTCCCCT
CCCATTTGGTTTTTTTGGGGGAAATTTGCCAAAACCTTTTGGGAAACAAA
ACCCCACCCTTTCTTGGGGAAAAAACCCCCAAGTTTCCTTTGGGGGCTTT
TTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCGACTTCATCAAAACACACAGCAGCATTTTGTCC
CTCAAAACTAAAACTATTAAGACTGGCAAATATTTTGGCTGTTACCCTCT
GGCTTTTGAAAATGTCCAACCTCTGAAAACTCATTTCCTAAAGCTTAGGT
TGCATTATGTGCAAAATCAGCTGGAGATCTGTAATCAAATTATACAATCA
AGATAGATCAAAAAAGTGCTTGTTAACAAAGTACAATTGAGCAGCTCTAA
TTTTTCCTAGCAAAAACCAAAAGAGATCATGTAGCTAAATTGCTTAATTT
GAAATCATGTTTCTGAAAAATATTGACATTGATGGATTTTGGCTTTATTT
TTTTGGATACATTTATAAACCAAAATGTAATGAAATTATAGAAGTCAGTG
ATTTTGCTCTTATCCATTTTTTACAAACTGTGTTAAAAAGAATCACAAAT
AGAGGCAACTTCAAAGTTTGGCTTATTAAAATATTAATGCAGAAAGATGC
TGTGAGTGGAGGTGGATAGGGAAGACACGTGGGAATATTGTTTTGGACAA
AGTAGAAGGGGGACAATAAATATGGAAGGACTGAGGGGTGAGCAGAACCC
AAGAGAGGAAGGAGGATGGAAAGAAAACAAATATTGTATTTTATGACATA
TGTGTCTTTGGTGTATTCTGTAAATTATATAAAAACAAAAGGACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_b05.g1 MSMg01no494_b05.g1 CHROMAT_FILE:
MSMg01no494_b05.g1 PHD_FILE: MSMg01no494_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:50 2005
         (579 letters)



>mm_chr19_12881598_12882576
          Length = 979

 Score = 1011 bits (523), Expect = 0.0
 Identities = 558/579 (96%), Gaps = 16/579 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgacttcatcaaaacacacagcagcattttgtccctcaaaactaaaactattaagactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgacttcatcaaaacacacagcagcattttgtccctcaaaactaaaactattaagactg 260

                                                                       
Query: 61  gcaaatattttggctgttaccctctggcttttgaaaatgtccaacctctgaaaactcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaatattttggctgttaccctctggcttttgaaaatgtccaacctctgaaaactcatt 320

                                                                       
Query: 121 tcctaaagcttaggttgcattatgtgcaaaatcagctggagatctgtaatcaaattatac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaaagcttaggttgccttatgtgcaaaatcagctggagatctgtaatcaaattatac 380

                                                                       
Query: 181 aatcaagatagatcaaaaaagtgcttgttaacaaagtacaattgagcagctctaattttt 240
           || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcaagatagatcgaaaaagtgtttgttaacaaagtacaattgagcagctctaattttt 440

                                                                       
Query: 241 cctagcaaaaaccaaaagagatcatgtagctaaattgcttaatttgaaatcatgtttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagcaaaaaccaaaagagatcatgtagctaaattgcttaatttgaaatcatgtttctg 500

                                                                       
Query: 301 aaaaatattgacattgatggattttggctttatttttttggatacatttataaaccaaaa 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  
Sbjct: 501 aaaaatattgacattgatggattttggctttatttttt-ggatacatttataaaccaa-- 557

                                                                       
Query: 361 tgtaatgaaattatagaagtcagtgattttgctcttatccattttttacaaactgtgtta 420
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 -------------tagaagtcagtgattttgctcttatccattttttacaaactgtgtta 604

                                                                       
Query: 421 aaaagaatcacaaatagaggcaacttcaaagtttggcttattaaaatattaatgcagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaaagaatcacaaatagaggcaacttcaaagtttggcttattaaaatattaatgcagaaa 664

                                                                       
Query: 481 gatgctgtgagtggaggtggatagggaagacacgtgggaatattgttttggacaaagtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gatgctgtgagtggaggtggatagggaagacacgtgggaatattgttttggacaaagtag 724

                                                  
Query: 541 aagggggacaataaatatggaaggactgaggggtgagca 579
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 725 aagggggacaataaatatggaagtactgaggggtgagca 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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