BAC Information

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BAC

Clone NameMSMg01-494H12
Chromosome19 (Build37)
Map Location 16,755,469 - 16,756,005
singlet/doubletsinglet
Overlap geneVps13a
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494H12.T7 (MSMg01no494_h12.b1)MSMg01-494H12.TJ (MSMg01no494_h12.g1)
ACCAG571741AG571742
length1,214733
length of high quality
(start - end)
---552 (64 - 615)
definitionCHROMAT_FILE: MSMg01no494_h12.b1 PHD_FILE: MSMg01no494_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:19 2005CHROMAT_FILE: MSMg01no494_h12.g1 PHD_FILE: MSMg01no494_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAACGCGTTATTAATTTTCCCTCCCTTCCTTCCTTTTATCCCTCTCGGC
TAGAGGATAGAAGTGTACGTATACTTAGGCACGCAGAGGCAAAACCGGAT
GTGTGTCGAAGCGGAAGGAGGTGTTTGCTGAGGTACGCCGTTATTCGTGC
CATTGCAAGCTAATATCGCCCTCTTGCTTGCTTCTTCTCACGTGTGTATG
CTACCTCGCGTGATGATTGCGTGACGGTGCAAGAATCGTTTNATATACAT
TTTTCCTTACCTACCTCTCCAGGCTTTGCCCCACCGCAACACCCATGGTA
ATGGCACTTCTAGTACCGTTTTCATACTGCCCACTTCTGTTTTATCCTCC
CACAANGTACACATGCATACAGCGTTATATCTGCGCGCCGTCGCGCATCG
TCGCGAGGTCGGGTAGGCGGGCAGGATTTCCGTTTCAGTAGTGGTGCCCC
CTTCTCTTGCGTTTATACGCGTCCTTATCCGCGTGCGGTGGTGTCAGATG
GATCTGTGGGTTTGTTAATCGCGTTTATCGGGCGGCATGATTCAGCCATT
ATAAAACTCGTAACTATACACCTCCCACGCTAGATATTACCAAGATTTGA
GTGTCCCGTCAGCTGTCGTTATTTTTAACCATGTTTTCCAGAGTCAGTTT
CGCGTCAAGAAGCAACACAACCAAATCACACACGAGACGACGGGGATGAA
GGATTGATGCCGGGAGTGAGACACCTATTTCTCGCGCGCGCAACGATGGT
GTACCCTTCTGAGGCCGCGCTTTTGTATCGGCAGGGTAGCCACTAGTGAG
CGCGCCGTGCGATTTGGTTTCGCCGCAGCAGTGATAACCAGCGAGTTACG
CCACTCCGCTATATTTCGCCGAGCCGCCGCCGCGCGCGCATGTGGCACAC
CGTCCACACCCTTCTCGTCTATTATTGTTTATCCTCTACACCCGATATGA
ATGCTCACGCATTTATTTCCGCGCTACGCTTTCGCTAAATTCGGTGAGAC
ACACCACAGCCGCCACCGCGCCTTATAATCGCGCGCCGACAAAAGACGGA
CGGATGAGGTGCAGCGCTGCGTCGAACTCTCTCTCTTACCCGTTTATATC
CCTCGGGCGTTAATCCCGTCGCTATATTTGCGTAATACTGTCGCAGACAG
CGCATACGCGGAGTGGGATGAGGCACGCGACGGTTTGATGCCGATAGATA
GGCGGAGATGACCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGGAGACAACCCAACAGTTCGTAGCTTCTTGCTCT
TCCAGAGATCAGAGTCTGGTTCCCAGCACCCATATCTGTCAGCTCACAAC
TGCCGGCAACTCTGCCCCTGCCACTTCTGGGAAAATCTGACACCTTCTTT
GGACCTCTTTGGGCACAGGCATATACGTGGCACATATTGACACAAACACA
CAAATGTACATAAAAATTAAATGAAAATCTTCTTTTAGTGAGATTATCAA
TAGATAGTTGTTCAGGTTAAAAATTCTTATTTTTAAGAACTAAAGTTAAA
ATTTTCTTTGAAGAGGTAGATTAAATGTATGAATACTTGGGTAATCTCTT
CTAATTCTTAAAGCATCATTACTGGGGATATTCTTGAGGTGTGGAGTGGT
TCCTTAGAATGTGTGAGACCTTGGACTTCAATTCTAAACCCTACCAAAAA
ATTTTTTTTAAAGAGGGAAAAAAGAATCACAGTAAACATATTTTACCTTA
GAATTTATAAAATTATTTCCATGGATATTTGAGATAAAATTAATTATGAA
AATGGCTGGAAATACAGGTCAGTAGTGGGATATATGTGTGTGTAACACTA
ATCTTAATACCAGTGCTGCAGAAACAGAAAAATTACATACAGTTATCTCC
AGTGATACTTAAAGTTATTTTACTTAATATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_h12.g1 MSMg01no494_h12.g1 CHROMAT_FILE:
MSMg01no494_h12.g1 PHD_FILE: MSMg01no494_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:19 2005
         (552 letters)



>mm_chr19_16755054_16756005
          Length = 952

 Score = 1031 bits (533), Expect = 0.0
 Identities = 536/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  acagttcgtagcttcttgctcttccagagatcagagtctggttcccagcacccatatctg 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 acagttcgtagcttcttgctcttccagagatcagagtctggttcccagcacccatatctg 893

                                                                       
Query: 76  tcagctcacaactgccggcaactctgcccctgccacttctgggaaaatctgacaccttct 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tcagctcacaactgccggcaactctgcccctgccacttctgggaaaatctgacaccttct 833

                                                                       
Query: 136 ttggacctctttgggcacaggcatatacgtggcacatattgacacaaacacacaaatgta 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ttggacctctttgggcacaggcatatacgtggcacatattgacacaaacacacaaatgta 773

                                                                       
Query: 196 cataaaaattaaatgaaaatcttcttttagtgagattatcaatagatagttgttcaggtt 255
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cataaaacttaaatgaaaatcttcttttagtgagattatcaatagatagttgttcaggtt 713

                                                                       
Query: 256 aaaaattcttatttttaagaactaaagttaaaattttctttgaagaggtagattaaatgt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaaaattcttatttttaagaactaaagttaaaattttctttgaagaggtagattaaatgt 653

                                                                       
Query: 316 atgaatacttgggtaatctcttctaattcttaaagcatcattactggggatattcttgag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atgaatacttgggtaatctcttctaattcttaaagcatcattactggggatattcttgag 593

                                                                       
Query: 376 gtgtggagtggttccttagaatgtgtgagaccttggacttcaattctaaaccctaccaaa 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtgtggagtggttccttagaatgtgtgagaccttggacttcaattctaaaccctaccaaa 533

                                                                       
Query: 436 aaattttttttaaagagggaaaaaagaatcacagtaaacatattttaccttagaatttat 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaattttttttaaagagggaaaaaagaatcacagtaaacatattttaccttagaatttat 473

                                                                    
Query: 496 aaaattatttccatggatatttgagataaaattaattatgaaaatggctggaaatac 552
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaattatttccatggatatttgagataaaattaattatgaaaatggctggaaatac 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)