BAC Information

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BAC

Clone NameMSMg01-494K10
Chromosome19 (Build37)
Map Location 12,028,240 - 12,028,749
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
Downstream geneOsbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494K10.T7 (MSMg01no494_k10.b1)MSMg01-494K10.TJ (MSMg01no494_k10.g1)
ACCAG571880AG571881
length729723
length of high quality
(start - end)
595 (36 - 630)510 (65 - 574)
definitionCHROMAT_FILE: MSMg01no494_k10.b1 PHD_FILE: MSMg01no494_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:32 2005CHROMAT_FILE: MSMg01no494_k10.g1 PHD_FILE: MSMg01no494_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGT
TCCTACCTAAACGTAATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGG
AAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGC
TTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTT
TCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTTTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACT
AAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGA
AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGATCAATATTGTAAAAATGGCTATCTTGCTCAAAGCAATCTACAGA
TTCAATGCAATCCCCATCAAAATTCCTACACAATTCTTCAACGAAATAAA
AGGAGCAATTTGCACATTCACCTGGAATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGACATGGCTAAGCACCATGTATTTTCTAAACTCA
AAGTCCTAACAATCCTCATTGCATTTCAAAATGCTCATTTTTTTTCTCTT
GATACTAAAAGTGTATGTACATTGATCAGGGCATAGTGGTGCATGCCTTT
AATACCTAGAACTTAGGAAGCAGAGGCAGGTGGATTTCTGTGAGTTCGAA
GCCAGCCTGTTCTATGAAGTGAGTTCCAAGCTAGCCAAAGCTATACACAG
AAAACTCGGTCTCGAAAAACCAAAAATAAGCCAGAAATGTATATATCTTA
TTACATCTCTTTTCAGTGTTGAAAATGAAGTCTTACATGGCATCTTTGAT
TCTTGTTTGCTTGTACAAGACTGATCAAATACTTGCGGTCATTGTGCTGG
CTCCAGTAAGCTTCACTTCAAAGGGTCCTGTTCATTTGATTAATGAAAAC
CAAAGTACTATGATACTTGTGGTAGCTGTACTGAGTTAGCTTTAGGTGCT
GCTCCGCCCTTTGAGCTTTGGGAGGCGTGGTGATAGTTACAGAGGGTTAA
GACGCCATGACTGTCATGGCTGATAGCAGCGGCATCATGCACGTAAGCAG
GTTACTGGGTTCATAGCTGGGAGCTCATCATAAGCTGAGGGGCTTTTGCT
TTGGGATCTTCTTCCTTCGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_k10.g1 MSMg01no494_k10.g1 CHROMAT_FILE:
MSMg01no494_k10.g1 PHD_FILE: MSMg01no494_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:32 2005
         (510 letters)



>mm_chr19_12028040_12028949
          Length = 910

 Score =  948 bits (490), Expect = 0.0
 Identities = 505/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacatggctaagcaccatgtattttctaaactcaaagtcctaacaatcctcattgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacatggctaagcaccatgtattttctaaactcaaagtcctaacaatcctcattgcat 260

                                                                       
Query: 61  ttcaaaatgctcattttttttctcttgatactaaaagtgtatgtacattgatcagggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaaatgctcattttttttctcttgatactaaaagtgtatgtacattgatcagggcat 320

                                                                       
Query: 121 agtggtgcatgcctttaatacctagaacttaggaagcagaggcaggtggatttctgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggtgcatgcctttaatacctagaacttaggaagcagaggcaggtggatttctgtgag 380

                                                                       
Query: 181 ttcgaagccagcctgttctatgaagtgagttccaagctagccaaagctatacacagaaaa 240
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttcgaagctagcctgttctatgaagtgagttccaagatagccaaagctatacacagaaaa 440

                                                                       
Query: 241 ctcggtctcgaaaaaccaaaaataagccagaaatgtatatatcttattacatctcttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcggtctcgaaaaaccaaaaataagccagaaatgtatatatcttattacatctcttttc 500

                                                                       
Query: 301 agtgttgaaaatgaagtcttacatggcatctttgattcttgtttgcttgtacaagactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgttgaaaatgaagtcttacatggcatctttgattcttgtttgcttgtacaagactga 560

                                                                       
Query: 361 tcaaatacttgcggtcattgtgctggctccagtaagcttcacttcaaagggtcctgttca 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaatacttgcagtcattgtgctggctccagtaagcttcacttcaaagggtcctgttca 620

                                                                       
Query: 421 tttgattaatgaaaaccaaagtactatgatacttgtggtagctgtactgagttagcttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 621 tttgattaatgaaaaccaaagtactatgatacttgtggtagctgtactgagttattttta 680

                                         
Query: 481 ggtgctgctccgccctttgagctttgggag 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 ggtgctgctccgccctttgagctttgggag 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)