Query= MSMg01no495_b15.b1 MSMg01no495_b15.b1 CHROMAT_FILE:
MSMg01no495_b15.b1 PHD_FILE: MSMg01no495_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:06 2005
(559 letters)
>mm_chr19_22084950_22085908
Length = 959
Score = 1027 bits (531), Expect = 0.0
Identities = 552/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 1 aacttatctatcaggcagcaattcccctgttgggttttgttatgctttgggctgccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttatctatcaggcagcaattcccctgttgggttttgttatgctttgggctgccattc 260
Query: 61 aaagaaaaatgttcttctattaggagtaaaatgaaataaatagcctttgaggtcttaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaaaatgttcttctattaggagtaaaatgaaataaatagcctttgaggtcttaaga 320
Query: 121 agcactgatgcaaaggtaaactttgagaaggggttctaatgaaatgatatggagctatgc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agcactgatgcaaaggtaaactttgagaaggggttctaaggaaatgatatggagctatgc 380
Query: 181 tgcatgtggggcactgggctgccagaaaatggtatgaaaggaattcctggggcataaaat 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatgtggggcgctgggctgccagaaaatggtatgaaaggaattcctggggcataaaat 440
Query: 241 gcttttgtctatgaccacagcattagaaaatcagtaattccttagcactttagttccaat 300
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagtgactatgaccacagcattagaaaatcagtaattccttagcactttagttccaat 500
Query: 301 tgtaacacttagcatggaggcacgtaattgcaagttcaagggcaaactggcctatataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaacacttagcatggaggcacgtaattgcaagttcaagggcaaactggcctatataat 560
Query: 361 gagaccttctctcaaaaaaaaaagaatagcaaattaaaaatggtaaacacaagttacaca 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaccttctctcaaaaaaaaa-gaatagcaaattaaaaatggtaaacacaagttacaca 619
Query: 421 tttcagtaaggctaaagatccttctgcttgcagaagataattagtagactaaaggcaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttcagtaaggctaaagatccttctgcttgcagaagataattagtagactaaaggcaaca 679
Query: 481 acataccaccaagtctgttactggtaacaaccaaaataacagattagccagcactcaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acataccaccaagtctgttactggtaacaaccaaaataacagattagccagcactcaggg 739
Query: 541 agcccagaggagtccagta 559
||||| |||||||||||||
Sbjct: 740 agccccgaggagtccagta 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_b15.g1 MSMg01no495_b15.g1 CHROMAT_FILE:
MSMg01no495_b15.g1 PHD_FILE: MSMg01no495_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:06 2005
(654 letters)
>mm_chr19_22263960_22265012
Length = 1053
Score = 1141 bits (590), Expect = 0.0
Identities = 642/664 (96%), Gaps = 13/664 (1%)
Strand = Plus / Minus
Query: 1 tctattttagaaatgttgccaaagaaattatttctaaatcagtgatgtcttttataatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctattttagaaatgttgccaaagaaattatttctaaatcagtgatgtcttttataatac 683
Query: 61 aaatactcaaaatatcactttctccaaagtactgaaacaaacagaatttcttattttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaatactcaaaatatcactttctccaaagtactgaaacaaacagaatttcttattttgac 623
Query: 121 tgtgtttttaaggtaaaataaaatagaaaagatattgatttggaaaagattttcttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtgtttttaaggtaaaataaaatagaaaagatattgatttggaaaagattttcttctat 563
Query: 181 aataaccccatcaggcttttaaaacaaaatctcacaagcatatatttccccattcacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aataaccccatcaggcttttaaaacaaaatctcacaagcatatatttccccattcacact 503
Query: 241 gctgtcgtcatggagaccaaactctggcacatttgatggtgtaacctacacatctttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgtcgtcatggagaccaaactctggcacatttgatggtgtaacctacacatctttcta 443
Query: 301 gcctgaaaaattcccttgttgtcatggaaactgccagtcactagcctttctattctttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcctgaaaaattcccttgttgtcatggaaactgccagtcactagcctttctattctttga 383
Query: 361 tgctcccatagataccactgaaatttcagctgtgatttttcccactctctaatgatcttg 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 tgctcccatagataccactgaaatttcagctgtga-ttttcccactctctaatgatcttg 324
Query: 421 gggctatcagacaatgctaaaaagaaaacaaaataaaattctggtacctttcacctaaat 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 gggctatcagacaatgctaaaaagaaaacaaaacaaaattctggtacctttcacctaaat 264
Query: 481 gttcaatgatcaccaccctcaaccccctgaaacatacagtattacaactaatttgcttga 540
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 263 gttcaatgatcaccatcctcaacctcctgaaacatacagtattaggactaatttgcttga 204
Query: 541 ct--ga----a----atccttaaaattgtttagccactctgaagagtttaatattaataa 590
|| || | ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 203 ctgcgatcctaggtgatccttaaagttgtttagccactctgaagagtttaacattaataa 144
Query: 591 ttattttttcatttcacttaaaaataattgagtcatgagaggtattagttctctaatgaa 650
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 143 tt-gtttttca-ttcacttaaaaataattgagtcatgagaggtattagttctctagtgaa 86
Query: 651 taaa 654
||||
Sbjct: 85 taaa 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
