Query= MSMg01no495_l18.b1 MSMg01no495_l18.b1 CHROMAT_FILE:
MSMg01no495_l18.b1 PHD_FILE: MSMg01no495_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:51 2005
(600 letters)
>mm_chr19_24400396_24401393
Length = 998
Score = 1071 bits (554), Expect = 0.0
Identities = 588/602 (97%), Gaps = 6/602 (0%)
Strand = Plus / Minus
Query: 1 cctgcttaactagacttttagccagaggcatctgtcttaccctctctccctctccccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cctgcttaactagacttttagccagaggcatctgtcttaccctctctccctctccccaac 739
Query: 61 taaatgcacactttccctcttattcctgacttgttaaggagctctggggatcaaaataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taaatgcacactttccctcttattcctgacttgttaaggagctctggggatcaaaataga 679
Query: 121 gaaaatgaagtgagcagggaaacatgtatcaaaaatagacagtttgtcttctccggttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaaaatgaagtgagcagggaaacatgtatcaaaaatagacagtttgtcttctccggttcc 619
Query: 181 tctgatccatcatgttatctactactgagggtccgttttcatttaagattctgatttggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctgatccatcatgttatctactactgagggtccgttttcatttaagattctgatttggg 559
Query: 241 ggagaaaaa--ttttagaataagcatttatttctggacaagttattcttgtagttgcaaa 298
||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 558 ggagaaaaaac----agaataagcatttatttcgggacaagttattcttgtagttgcaga 503
Query: 299 atcaaaaggtggaagcagattcctcccctaccaaaggtagaaatagtacttttcatgagt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 atcaaaaggtggaagcagattcctcccctaccaaaggtagaaatagtacttttcatgtgt 443
Query: 359 agacagaaggacaactcctgtctgaatccagagacctagttaagttcatttaaacataac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agacagaaggacaactcctgtctgaatccagagacctagttaagttcatttaaacataac 383
Query: 419 gttgatcattggctcttttgagatttaaaacaaataataacaataaaagctgaagcccct 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtttatcattggctcttttgagatttaaaacaaataataacaataaaagctgaagcccct 323
Query: 479 ggccaagaggggaagcctccctgagctagaacaaggttgaaggtctcaattctcacggcc 538
||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct: 322 ggccaagaggggaagcctccctgagctcgagcaaggttgaaggtctcgattctcacggcc 263
Query: 539 tcgtaaagaagagagacattgcattattgtgatggggagaggaaagtcttgctgcttttc 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 tcgtaaagaagagagacattgcattattgtgatggggagaggaaagccttgctgcttttc 203
Query: 599 gt 600
||
Sbjct: 202 gt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 998
Length adjustment: 10
Effective length of query: 590
Effective length of database: 988
Effective search space: 582920
Effective search space used: 582920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_l18.g1 MSMg01no495_l18.g1 CHROMAT_FILE:
MSMg01no495_l18.g1 PHD_FILE: MSMg01no495_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:51 2005
(579 letters)
>mm_chr19_24264945_24265923
Length = 979
Score = 868 bits (449), Expect = 0.0
Identities = 491/505 (97%)
Strand = Plus / Plus
Query: 1 ctagataggcctggctgacctggaactcactaggtagaccaggctgctggaactcagtaa 60
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtagacctggttgacctggaactcactaggtagaccaggctgctggaactcagtaa 260
Query: 61 tccaccttcaaaccgtgctgatgagaggagaccccaagaacaagacagataatgatccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaccttcaaaccgtgctgatgagaggagaccccaagaacaagacagataatgatccag 320
Query: 121 aggaggctctgcatacaccctcctcccctcaggccagacagtgctagtagatcatagcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaggctctgcatacaccctcctcccctcaggccagacagtgctagtagatcatagcgt 380
Query: 181 ccttgctcaatgaacttgggagcatctaggaatccttaactcagggcagcttcgctccta 240
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ccttgctcaatgaacttaggagcatctaggaatccttaactcggggcagcttcgctccta 440
Query: 241 ggaggtccttctacgttctgatttttgcaactctgactggcaagtcttccccatagcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggtccttctacgttctgatttttgcaactctgactggcaagtcttccccatagcagc 500
Query: 301 caggcttccttgaaagtcagttctcctgatcgacttttaagaaagcctgtcttgtgaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcttccttgaaagtcagttctcctgatcgacttttaagaaagcctgtcttgtgaggt 560
Query: 361 gcttccatagctggcttggaacctcctttataagagcattagttttgagggcagaatccc 420
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gcttccatagctggcttggagcctcctttataaaagcattagttttgagggcagaatcct 620
Query: 421 cataacctaatcacgccttaagccaactcctaagtaccatcacacccaggtggttaaaat 480
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 621 cataaccgaatcacgccttaagacaactcctaagtaccatcacacccaggtggttcaaat 680
Query: 481 gtgtgtgtgcgtgcgtgcgtgtgtg 505
||||||||| ||| ||| |||||||
Sbjct: 681 gtgtgtgtgtgtgtgtgtgtgtgtg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
