BAC Information

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BAC

Clone NameMSMg01-496D13
Chromosome19 (Build37)
Map Location 45,662,648 - 45,663,336
singlet/doubletsinglet
Overlap geneFbxw4
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496D13.T7 (MSMg01no496_d13.b1)MSMg01-496D13.TJ (MSMg01no496_d13.g1)
ACCAG573078AG573079
length7691,307
length of high quality
(start - end)		690 (80 - 769)---
definitionCHROMAT_FILE: MSMg01no496_d13.b1 PHD_FILE: MSMg01no496_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:29 2005CHROMAT_FILE: MSMg01no496_d13.g1 PHD_FILE: MSMg01no496_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGGATGG
GCGGAATTCCACAGGATGCCAACAGCCCCAGGACGAGAGACCACAGGAGC
CTGAGAAGTCCGAGCTCAGCAGACAGTGGTGATGGGACCACTTACTGCCT
GGACAGAAGCAGTAGATCTGAAAGGAGAGAGGCCACAGCACATCTCCCAC
GAAACAGACCACATTTTGGACTGCTCAGTGCTCAGAGGGACTGAGACATA
AACTGTAAGGTACAAATGACCCTGGAGCCAGCATGAGGCCAACTGCATAG
GGCACCACTGACCCACCCTCATGTTTCTGCCTGTTAACCAAACCCTGATT
CTGCAACACCTGCCTCTCTCCCTGTCAGTGCTGTTATGTCCAGGGGAGGC
TGCTCTTTTCTCAAGCCAAAGAGGCAAAGCACAATGGCTCCATCCTTTCC
TCTTGCCAGGGTTTGGTTTAGGATGAGACCTTGAACATAGTCTTGACAAT
TAGATGTGAGGAGAAGCCCATTCAGCATTCCTGGGAAAGGCTCGTTCACA
GTAAAGTGGTCCCAGGCACACATAGGTCTTCCTTCTACTTTTGAATGTTG
TCTTATGAGTTGGTGGCACTGTTGTCACCAAGCCACCATGACTGCAGTGG
CAAGGGAAAGCTGAGTAAGGATGGCCCTTCCAGGTCTGGAGCCACCCAAC
TCTGGGCTCTTGGGCATCTTCGATCATAATTCCATTCTTATTTGAATTAG
ATTTTCATTACTTAGAGCC

AGCCTAAATACTAANCCCCGGCGGCTACAGNGTGGGCAAGGCCTCGGCTC
TCTATCACACGGTGGTGTGGGAGAGTGTTCGAACGTTTTCTCCCCCCGAC
AACAGTCTCTCTGCGCTGTCGGACCCAGTCGCAGAAAAAAGTTAGTTCCG
GTTGTGGCTATTTCGTCTCTCGCTATATCGTGTTTCCATCCGCTTATTTG
CTCACTACGGCTCTACGGCAGTCCTAGTAGATACTGCATTCTGCTGGTGC
TCATTTTCCATCGATCAAAATGCAGAGATGGGCCAGCGTAGAAGACGGAC
GACATTGTTTAGGCAGTGGGATATAGATAGCGGAGGCACGATGCCAATAT
ATTNCGTACAGATAGGCATAGGTACTAGCCACAGCGCGGTATATGACGTG
CGTACACGTGCCATCATCACTCATGTAGCCACCCATAGAACACAATACTA
TCATCGCCGTCCCGTTGTATTGCTTCCGCGCCGCACGCCAATAATACTCT
CCTAATTACACCCTCTACCGGGCTGTTCGAGCTCCACCCCTGTGATTATT
GTTCATACGCGACGACTACCGCCGTGTTGCGTCGCGCCATTTCTTCAGCT
GGTGCCGCCCGCGCGGACGGCACGGGGATTGGGGCGGCTATACCTCTTGT
GCGGTTGAGTAGTGGCACTAACTTTAATGTCTGACCTTAGAGTCGCTTGC
GCCGTACTCCTCCTCGTATTATTAACAACTGCTCACGTCTCGTAATGCGT
CTTACCTTCAGCAGAGATATTTCTGGCGGCGTAGATCTACTTGTTGTATC
TGATTAATGATACTGGGTCACTCCCGCGTCTCTCGCGAGATCTATGTACC
TATCACCCCGCATATAAGTCTATACGCCCATCGCGCCGACTGATGCGTGT
TGCTGAGTGGTAGCGCCAGCACGCGATGAAGTTCATATATCGCGGCTGAT
NGNGAGTACGCACCACACTGACAATTACACGATGGCGCTTCCACCCAGCG
CGGCCACGTGTTTGGTACATGTCGCCTTTCCTTCTCGCCCCTCCTAGACA
CAGGACAATGTACCAAATATGTGCTCTTCTCTACCATATTCCGCGACACT
ATTGTATCCACACTCCGCGCTCCCGGACGCTCCTATATATATAGATGTAA
TCCTGACTGTGTCCGTCGTCTACATGTGTCTACTATCTACATTGTAACGG
AGGTNGAGTGCGCGGTGANGTGGATCCGTATTAGGTCTGCGCACACGTAA
TAAGCCGCTTAATCACATTTAATGGCAGCGCGATATATCTCTACTACCGG
CGCGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_d13.b1 MSMg01no496_d13.b1 CHROMAT_FILE:
MSMg01no496_d13.b1 PHD_FILE: MSMg01no496_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:29 2005
         (690 letters)



>mm_chr19_45662448_45663536
          Length = 1089

 Score = 1241 bits (642), Expect = 0.0
 Identities = 678/690 (98%), Gaps = 1/690 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacgagagaccacaggagcctgagaagtccgagctcagcagacagtggtgatgggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacgagagaccacaggagcctgagaagtccgagctcagcagacagtggtgatgggacc 260

                                                                       
Query: 61  acttactgcctggacagaagcagtagatctgaaaggagagaggccacagcacatctccca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 acttactgcctggacagaagcagtagatctgaagggagagaggccacagcacatctccca 320

                                                                       
Query: 121 cgaaacagaccacattttggactgctcagtgctcagagggactgagacataaactgtaag 180
           ||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cgagaccgaccaca-tttggactgttcagtgctcagagggactgagacataaactgtaag 379

                                                                       
Query: 181 gtacaaatgaccctggagccagcatgaggccaactgcatagggcaccactgacccaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtacaaatgaccctggagccagcatgaggccaactgcatagggcaccactgacccaccct 439

                                                                       
Query: 241 catgtttctgcctgttaaccaaaccctgattctgcaacacctgcctctctccctgtcagt 300
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgttcctgcctgttaaccagaccctgattctgcaacacctgcctctctccctgtcagt 499

                                                                       
Query: 301 gctgttatgtccaggggaggctgctcttttctcaagccaaagaggcaaagcacaatggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgttatgtccaggggaggctgctcttttctcaagccaaagaggcaaagcacaatggct 559

                                                                       
Query: 361 ccatcctttcctcttgccagggtttggtttaggatgagaccttgaacatagtcttgacaa 420
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccgtccttgcctcttgccagggtttggtttaggatgagaccttgaacatagtcttgacaa 619

                                                                       
Query: 421 ttagatgtgaggagaagcccattcagcattcctgggaaaggctcgttcacagtaaagtgg 480
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttagatgtgaggagacgcccgttcagcattcctgggaaaggctcgttcacagtaaagtgg 679

                                                                       
Query: 481 tcccaggcacacataggtcttccttctacttttgaatgttgtcttatgagttggtggcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcccaggcacacataggtcttccttctacttttgaatgttgtcttatgagttggtggcac 739

                                                                       
Query: 541 tgttgtcaccaagccaccatgactgcagtggcaagggaaagctgagtaaggatggccctt 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 tgttgtcaccaagccaccatgactgcagtggcaggggaaagctgagtaaggatggccctt 799

                                                                       
Query: 601 ccaggtctggagccacccaactctgggctcttgggcatcttcgatcataattccattctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ccaggtctggagccacccaactctgggctcttgggcatcttcgatcataattccattctt 859

                                         
Query: 661 atttgaattagattttcattacttagagcc 690
           ||||||||||||||||||||||||||||||
Sbjct: 860 atttgaattagattttcattacttagagcc 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space:   733720
Effective search space used:   733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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