BAC Information

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BAC

Clone NameMSMg01-496E10
Chromosome19 (Build37)
Map Location 36,075,527 - 36,075,765
singlet/doubletsinglet
Overlap geneHtr7
Upstream geneLOC383464, LOC100042292, A830019P07Rik
Downstream geneRpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496E10.T7 (MSMg01no496_e10.b1)MSMg01-496E10.TJ (MSMg01no496_e10.g1)
ACCAG573120AG573121
length990756
length of high quality
(start - end)
---239 (82 - 320)
definitionCHROMAT_FILE: MSMg01no496_e10.b1 PHD_FILE: MSMg01no496_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:33 2005CHROMAT_FILE: MSMg01no496_e10.g1 PHD_FILE: MSMg01no496_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAGGATAAATAGAAANCAACCTCCTCCGGGGTTGTCCCTCCCGTGTGG
GAGCGCCGGGCGATTTATATATCTTTCTCGGTGGGGGGGTGGCCTCCACC
CCCCGGGTCTCGAAGATAGAGGGAAGATAGTAGAAACACTTATATATTCC
GGCGCGGGGTGGGGTTTGTATTACTCGCCGCCCCCCCTCTCTTGTTTTCT
CTCTTTGCGCCGCGATAAGAAGACAATAACGTATTTTACCCTAGATTGAG
TACAAAAACGTGTCCCTCCGGCCGGGCGGTTGTCTTTGGCTTATAAAAAT
ATAACAAAAAAAAGACACCCCACACGCGGCCCCGAATCCGGTCCCCTCGA
TTTCACCGTCTCCGCCCCCACGCCACAGCAGGAAAAAGCGAGAGGGGGGC
GGGGAGGGGGAGAGAGAGAGGGATGTTGTGTTGTTGGGTTCTGGTATTTC
TCCCCCACACCCGCCCGCTTCCGCACCGGCCCGGGACAATGNGAGATTAT
AAAAGAGAAGGAGAAAAATGTTTATGAGAGAGCGGGGCGAGGCTGTTTTC
GGCCGCCCTCGCCGCTCATATCTCTTTATGTTTAATAGGCCCCACTATCA
TATTCTCCACATCCCCATACAGCACGCGCGCGATTGCTCCGCAAGTTGTT
TTTTACTCGGTTACGCTGCCTCCCGTACCCTACATTCTTATAATCCCCAC
CCGCACACTTGTGGTCCTCGTGGTTCCGCTGCGGGCTGTTCGGTCCTCTC
CCCCCCCCCTCCATTATTCTCGCCTATCAGTCCGCCACAGAATATCCCCA
GTTTTTCGGTGATGGGCGGCAAGGCGTAATTGCTTACGCCAACCGCCCGC
CACCCTTCTATTTACCTATCCTACTCTCCGACCCTTCGGGGTAGAGCGTG
TTAAATATAATACAATCACCACAAATGTCATTTATACTATTTTCGGCGCC
GCCGCGAGGGAGAGTGAGGTTATTTTTTTGATCACCCCCN
TTTTTACGATTAAAGGCGTAGGTCTGGAGGACGCCTTTTCAAAAACATTG
AGGNGACACTATAGAATCACCCAAAGAAATTCATGAATAATACAGGAAAT
CTATAATGCGCCACTTTTCTGGAATAAGCGGGACATTAAAATGCAAATTG
CAGTGCCACACACAGCTGTACTTGATGTGACAAATTAAGCCTTTCTTATT
CTCAGGCTTGACATTTGCCGTCAAGATGTTTGTTGGCTGTACATAAAAAG
CACCTAATGGAGGTACCCAGGAGGGATGGAGACAGCAACCCAAGAGCCAG
CCGGGGAAGACATCCTCACAAATTTTTTGTAGGCACCTGCCCAGCTAACA
GAACCCGCTGAGAAACTGTCCCCTGCATTACTAAATTTTCTCAGGAAGAC
TTCTCACGAAAATGGCATTGCTCAATATCAAAGATATCTCTTTGTAATGA
CAAGGACTTTTATAAATCTAGAGGACACTGAGTAAGCTAGAAAGATTCTG
GCAGGGTACCCATTAAAGCCTTACTTGCACACCTCTTAGGTTTGGTCAAC
ACGCCCAGATAGGTCCTCTTGCCCTCCCTCACTCTTTAAATGGTCCCTCC
TTGCTGAGCTTTGTCCTCCTCATGCTGGCCCCCCTTACAAGTGATGACCT
AGTGTATGCCTCACTATACACCCCGATTCTCTGTTTAAGACTTGAACTCC
ACCTTACCTTTGTTCTGGATTCATTCTTGGTCATAGAATTACCCTCCATC
TTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_e10.g1 MSMg01no496_e10.g1 CHROMAT_FILE:
MSMg01no496_e10.g1 PHD_FILE: MSMg01no496_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:33 2005
         (239 letters)



>mm_chr19_36075327_36075965
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaataatacaggaaatctataatgcgccacttttctggaataagcgggacattaaaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaataatacaggaaatctataaagcgccacttttctggaataagcgggacattaaaa 260

                                                                       
Query: 61  tgcaaattgcagtgccacacacagctgtacttgatgtgacaaattaagcctttcttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaaattgcagtgccacacacagctgtacttgatgtgacaaattaagcctttcttattc 320

                                                                       
Query: 121 tcaggcttgacatttgccgtcaagatgtttgttggctgtacataaaaagcacctaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 321 tcaggcttgacatttgccgtcaagatgtttgttggctgtacataaaaagcaccaaaggga 380

                                                                      
Query: 181 ggtacccaggagggatggagacagcaacccaagagccagccggggaagacatcctcaca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtacccaggagggatggagacagcaacccaagagccagccggggaagacatcctcaca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)