BAC Information

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BAC

Clone NameMSMg01-496E11
Chromosome19 (Build37)
Map Location 49,951,314 - 50,120,284
singlet/doubletdoublet
Overlap geneEG433251
Upstream geneLOC629448, Siah1-ps1
Downstream geneSorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496E11.T7 (MSMg01no496_e11.b1)MSMg01-496E11.TJ (MSMg01no496_e11.g1)
ACCAG573122AG573123
length760757
length of high quality
(start - end)
657 (48 - 704)431 (327 - 757)
definitionCHROMAT_FILE: MSMg01no496_e11.b1 PHD_FILE: MSMg01no496_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:33 2005CHROMAT_FILE: MSMg01no496_e11.g1 PHD_FILE: MSMg01no496_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,119,633 - 50,120,284)(49,951,314 - 49,951,744)
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTCTCTCTCAGTTTTGAGTAATACCTTTTTAGTAGAAAAAT
AAATGTGTGCAAAAGGCCCAGAGAAGACTCAGCAACTGGGTTTCCAATAT
CTAGAGCCAATTGTCTGAGGATTTCTGTATTGTACTATAGATTATGTTAA
CCCATTAGCTTAAATAATTTTACCCTTTTAGTTTTATTGAAAAATAATGT
CTACCCACCTATCATCTACTGTTCTACTGTCTATCCCTTATCTATACATT
TATATAGAGAAAGATGAGAGATAAGAATGAAAATGGACATATAGCAAAAA
ATAAACTTTATTTCTTCTCCCAAATCCAGTTAAGGTTTTGGTGTGTAGCT
TTCACAAAAGCTTACATTACAGATGCTGTGGGCCCTACTATGCTATTTTA
CTGTTAGACTTCGTTAGGTTTTTGAACATAGAACAAAACTTAAGTTTGTA
TAGGTGGATAAGCATATGAATTTTACTGTACATATAGTTTCTGCATGTAC
AGAATCATAATGAGGATAAAAAACCGAAAAACCCATTTACAACTTAAAAA
CAAGAATTTTCTTATCATACATAATCCTTCCATATAGTCCTTTTAAAGTT
AGGTCTTTTCCTTATACCAATTTCTAGCTACCACTGATCCAATCATTACT
GTAGCTNTTTCAAGACTGTTACTTATTCCTGAAATGTCAAGAATCCATTC
AATGTGAAAA
NCCGATTATAGTGGGTAGGGNGGGNGGNCGCCTTTTCATACCAGGTAGGN
GACACTANAGAATGATCAAAACAGTGCNNCANGNGNCAGAATGTTTTCAG
TACAACAAAGCTGTGTTTTAAGGTAAGATTTAATGAAGACATTTTCATAA
TCAATAAGACATTTTGCTGGGTTTTTGTTTGTTGGTTTTTTTTTTTGCTG
TTGTTCTCATTTTACCCATTATTGTATCCATGTAAAATTAATAAAAATGT
TTTTATTATAACAGAATGGAAAAGCCTCAGAAAATTCAAAAATTAGCACT
ATAGATTTAAGAAAATATTTTTGATGTAAGTAAAAAAACATAATTGGAAA
ATGAAAAAATTACCTGTTATATTTAGTGCAATTTATTTAATACTGTGCAA
CATAAATATCATGTATGTGACAGACATTAACATTAAAGCTATATAACTGT
TAATAAGTATTAAAAAAAATGAATTACCTAAAGACAAAATGTTCAGTATT
TTTAATTGGCTTTATATAATGTATCCATAGTTTCATAATTCTGTGGTTAG
ACTGTAGTATACTACAGGTAAAACACTTCAGAATGGCTTCAAATATGGAA
AAATAAGCTATCATAAGCAATTTGCAGTTGAAGCATTTAGTCAACTTTTA
CTGGTCTATGAGAATTACCATTTAACACAGAGTATAAACATAGACATACT
TAGGGGCCAATGGTGCATGAATGGCATTTGAGTCTAAAAATGGAAACTCT
CACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_e11.b1 MSMg01no496_e11.b1 CHROMAT_FILE:
MSMg01no496_e11.b1 PHD_FILE: MSMg01no496_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:33 2005
         (657 letters)



>mm_chr19_50119429_50120484
          Length = 1056

 Score = 1201 bits (621), Expect = 0.0
 Identities = 645/653 (98%), Gaps = 1/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttctctctcagttttgagtaatacctttttagtagaaaaataaatgtgtgca 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcttttctcac-aagttttgagtaatacctttttagtagaaaaataaatgtgtgca 798

                                                                       
Query: 65  aaaggcccagagaagactcagcaactgggtttccaatatctagagccaattgtctgagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaaggcccagagaagactcagcaactgggtttccaatatctagagccaattgtctgagga 738

                                                                       
Query: 125 tttctgtattgtactatagattatgttaacccattagcttaaataattttacccttttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttctgtattgtactatagattatgttaacccattagcttaaataattttacccttttag 678

                                                                       
Query: 185 ttttattgaaaaataatgtctacccacctatcatctactgttctactgtctatcccttat 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttattgaaagataatgtctacccacctatcatctactgttctactgtctatcccttat 618

                                                                       
Query: 245 ctatacatttatatagagaaagatgagagataagaatgaaaatggacatatagcaaaaaa 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 ctatacatttatatagagaaagatgagagagaagaatgaaaatggacatatagcaaaaaa 558

                                                                       
Query: 305 taaactttatttcttctcccaaatccagttaaggttttggtgtgtagctttcacaaaagc 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taaagtttatttcttctcccaaatccagttaaggttttggtgtgtagctttcacaaaagc 498

                                                                       
Query: 365 ttacattacagatgctgtgggccctactatgctattttactgttagacttcgttaggttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttacattacagatgctgtgggccctactatgctattttactgttagacttcgttaggttt 438

                                                                       
Query: 425 ttgaacatagaacaaaacttaagtttgtataggtggataagcatatgaattttactgtac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgaacatagaacaaaacttaagtttgtataggtggataagcatatgaattttactgtac 378

                                                                       
Query: 485 atatagtttctgcatgtacagaatcataatgaggataaaaaaccgaaaaacccatttaca 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 atatagtttctgcatgtacagaatcataatgaggataaaaaacccaaaaacccatttaca 318

                                                                       
Query: 545 acttaaaaacaagaattttcttatcatacataatccttccatatagtccttttaaagtta 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 317 acttaaaaacaagaattttcttatcacacataatccttccatatagtccttttaaagtta 258

                                                                
Query: 605 ggtcttttccttataccaatttctagctaccactgatccaatcattactgtag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtcttttccttataccaatttctagctaccactgatccaatcattactgtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space:   676762
Effective search space used:   676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no496_e11.g1 MSMg01no496_e11.g1 CHROMAT_FILE:
MSMg01no496_e11.g1 PHD_FILE: MSMg01no496_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:33 2005
         (431 letters)



>mm_chr19_49951114_49951945
          Length = 832

 Score =  745 bits (385), Expect = 0.0
 Identities = 421/433 (97%), Gaps = 5/433 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagt-aaaaaaacataattggaaaatg-aaaaaattacctgttatatttagtgcaattt 58
           ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 201 taagtaaaaaaaacataattggaaaatgaaaaaaaatacctgttatatttagtgcaattt 260

                                                                       
Query: 59  atttaatactgtgcaacataaatatcatgtatgtgacagacattaacattaaagctatat 118
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 atttaatactgtgcaacataaatatcatgtatgtgacagacattaaaattaaagctatat 320

                                                                       
Query: 119 aactgttaataagtattaaaaaaaatgaattacctaaagacaaaatgttcagtattttta 178
           ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aactgttaataagtatt-agaaaaatgaattacctcaagacaaaatgttcagtattttta 379

                                                                       
Query: 179 attggctttatataat-gtatccatagtttcataattctgtggttagactgtagtatact 237
           |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 attggctttata-aattgtatccatactttcataattctgtggttagactgtagtatact 438

                                                                       
Query: 238 acaggtaaaacacttcagaatggcttcaaatatggaaaaataagctatcataagcaattt 297
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaggtaaaagacttcagaatggcttcaaatatggaaaaataagctatcataagcaattt 498

                                                                       
Query: 298 gcagttgaagcatttagtcaacttttactggtctatgagaattaccatttaacacagagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagttgaagcatttagtcaacttttactggtctatgagaattaccatttaacacagagt 558

                                                                       
Query: 358 ataaacatagacatacttaggggccaatggtgcatgaatggcatttgagtctaaaaatgg 417
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 ataaacatagacatacttaggggccaatagtgcatgaatggcatttgagtctaaaaatgg 618

                        
Query: 418 aaactctcacccc 430
           |||||||||||||
Sbjct: 619 aaactctcacccc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space:   347306
Effective search space used:   347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)