Query= MSMg01no497_b08.b1 MSMg01no497_b08.b1 CHROMAT_FILE:
MSMg01no497_b08.b1 PHD_FILE: MSMg01no497_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:38 2005
(654 letters)
>mm_chr19_11452649_11453702
Length = 1054
Score = 936 bits (484), Expect = 0.0
Identities = 536/558 (96%), Gaps = 12/558 (2%)
Strand = Plus / Minus
Query: 7 gaattcctcggtatcc--ggactggggagtctaaacacaatataacacaaagatacaaat 64
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaattcctcggaa--cagggactggggagtctaaacacaatataacacaaagatacaaat 495
Query: 65 tgtcaaaagaaggaatgtggataggactgagttacatatgctagaacctacaaatcaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtcaaaagaaggaatgtggataggactgagttacatatgctagaacctacaaatcaagg 435
Query: 125 aaacttcatgttgtcattttagttaatgatatattattaaccaacacttgtgtattctga 184
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 434 aaacttcatgctgtcattttagttaataatatattattaaccaacacttgtgtattccga 375
Query: 185 acttgactatattatacctgtgaattgtttacatacatatttctcataattatcattact 244
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acttgattatattatacccgtgaattgtttacatacatatttctcataattatcattact 315
Query: 245 tactttatacctgcatatctccatttagtattttctgtaaacgtattcccaagtcatgga 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 314 tactttatacctgcatatctccatttagtattttctgtaaacttattcccaagtcatgga 255
Query: 305 ttctttcctgcttcagaaaataatcaaaatcctgcctgtctgag--a--aaatgttttac 360
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 254 ttctttcctgcttcagaaaataatcaaaatcctgcctgtctgaggcagga----ttttac 199
Query: 361 ttttcctatattctgaaagatattttttctatttatcatggtcttgactgtcaagtatta 420
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 198 ttttcctatattctgaaagatattttttctagttatcatagtcttgactgtcaagtatta 139
Query: 421 tttcttaaagcactttgaatatatcaacctagtgtcccttggatattggatattttgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tttcttaaagcactttgaatatatcaacctagtgtcccttggatattggatattttgctg 79
Query: 481 aaaaaaaaatccactgcatgcttttaacaggttcattgtgataggagaaaatacatttgg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 78 aaaaaaaaatccactgcatgcttttaacaggttcattgtgataggaggaaatacatttgg 19
Query: 541 aacatgtgtgcttacagt 558
||||||||||||||||||
Sbjct: 18 aacatgtgtgcttacagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_b08.g1 MSMg01no497_b08.g1 CHROMAT_FILE:
MSMg01no497_b08.g1 PHD_FILE: MSMg01no497_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:38 2005
(609 letters)
>mm_chr19_11300089_11301097
Length = 1009
Score = 1104 bits (571), Expect = 0.0
Identities = 602/615 (97%), Gaps = 6/615 (0%)
Strand = Plus / Plus
Query: 1 acctaaacagtgaatattttgatgtatactgaaacagcaggggaggaaggacctcaggta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 195 acctaaacagtgaatattttgatgtatactgaaacagcaggggaggaagggcctcaggta 254
Query: 61 aaacctttgaggagccagtgagatggttcagtgggtaaggacatatgttgtctagtctga 120
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aaacctttgaggagctagtgagatggttccgtgggtaaggacatatgttgtctagtctga 314
Query: 121 tgaccagtgtgtgatactcagaccccatatgttggaaagaactgagtctttcaaattgcc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 tgaccagtgtgtgatactcagaccccgtatgttggaaagaactgagtctttcaaattgcc 374
Query: 181 ctctgatctccatgtatgtgtgcatgtatgt----atgcatgcatgcatgcacgaactca 236
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 375 ctctgatctccatgtatgtgtgcatgtatgtatgcatgcatgcatgcatgcacgaactca 434
Query: 237 tgctcacgcgtgtgagtgcgcgcgca--cacacacacagatacacacagacacacaaaca 294
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 tgctcacgcgtgtgagtgtgcgcgcacgcacacacacagatacacacagacacacaaaca 494
Query: 295 tacacatgtatacacataataaacattttaataaattttgtttgatttctgaatgaacta 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tacacatgtatacacataataaacattttaataaattttgtttgatttctgaatgaacta 554
Query: 355 caaagaagtctttggaaagtatgactacttcagcatctcctggtatccccatgagtacat 414
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caaagaagtctttagaaagtatgactacttcagcatctcctggtatccccatgagtacat 614
Query: 415 ttgtttgtaaagactgctgcgactgaggtgacaggggctgtcttgtataagtaaaacagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgtttgtaaagactgctgcgactgaggtgacaggggctgtcttgtataagtaaaacagt 674
Query: 475 tctctgtccaggcaatgctagtcacgagaaaaggaatcaatggaaatgaagtcactccta 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 tctctgtccaggcaatgctagtcacgagaaaaggaatcgatggaaatgaagtcactccta 734
Query: 535 gaatattagtcacatgcctgataacactctgtcactgttccaccaactagatggagacat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaatattagtcacatgcctgataacactctgtcactgttccaccaactagatggagacat 794
Query: 595 aaaaccataagaaat 609
|||||||||||||||
Sbjct: 795 aaaaccataagaaat 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
