BAC Information

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BAC

Clone NameMSMg01-497M03
Chromosome19 (Build37)
Map Location 35,170,901 - 35,171,307
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M03.T7 (MSMg01no497_m03.b1)MSMg01-497M03.TJ (MSMg01no497_m03.g1)
ACCAG574247AG574248
length758758
length of high quality
(start - end)
703 (47 - 749)404 (323 - 726)
definitionCHROMAT_FILE: MSMg01no497_m03.b1 PHD_FILE: MSMg01no497_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005CHROMAT_FILE: MSMg01no497_m03.g1 PHD_FILE: MSMg01no497_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTACC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTAGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACAATAACAACCAGTTGTGCCAGCACCAATTGTTGAAGAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTAATCACAATTGC
TCTGTAGTAAAGCTTTAGGTCACGCATGGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATG
AATTTGCA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGAACCCACAGTCCGCACATGTAGA
TTACAGCCAGGACAGCTTCAGCCAGAGAAAGGTGAGTCACAATCCCCAGT
TCGCTTCCAGTACCACACTGCAATCACGGCCTCTTGGTCTATATTTATGT
GAAAGCCTACTAAGCCTTCCAAACTTATTTCTACAAAGCTAAAGGGACTC
CGTTGGAGACAAAGGTGATCTGTGCTTTGAGTAGTCAAGCCGATACAGTG
TGGAGAAACTTTCAAGATATATAAGTACAAACTTAAAAATGTGAAACTGA
GATATTGCAAATGTCAAAAGAAGTCACAGGGTACCAAATGTGCTGAAGAC
TCAGGTGTCTGTCCAGTGGTTTCTTCTTAGACAATTGGCCAGAAATGCTC
ATGCGGTCGCTCCTTGAAGGAAGCTTGTTTCCCTTGCTGGCACGCTACTG
TCCCCACTACTCTCCAGTGTTCCCATACAGCTCCCACTACTTCCCAGAAT
TCCCTGGGTATATGGAAAGAAAAGGTTCTACAGAATTTATAAGGATGCTC
AGGATTTATAAGCAGTGTCTCCTGTCTTTCAAGTGTTTGCATCCAATCTC
TGATGGAACAGTGCATCCCCAAACGTGATGGTACAGATGGATGCCCTTAC
ATACTGATAGAAGCTACTGACACAAGACCACCTGGAGACACTTTCACCCA
GGAGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m03.g1 MSMg01no497_m03.g1 CHROMAT_FILE:
MSMg01no497_m03.g1 PHD_FILE: MSMg01no497_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:33 2005
         (404 letters)



>mm_chr19_35170701_35171507
          Length = 807

 Score =  716 bits (370), Expect = 0.0
 Identities = 397/408 (97%), Gaps = 5/408 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtacaaacttaaaaatgtgaaactgagatattgcaaatgtcaaaagaagtcacagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aagtacaaacttaaaaatgtgaaactgagatattgcaaatgtcaaaagaagtcacagggt 548

                                                                       
Query: 61  accaaatgtgctgaagactcaggtgtctgtccagtggtttcttcttagacaattggccag 120
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 547 accaaa-gtgctgaagactcaggtgtctgtccagtggtttcttcttagacaattggacag 489

                                                                       
Query: 121 aaatgctcatgcggtcgctccttgaaggaagcttgtttcccttgctggcacgctactgtc 180
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 488 taatgctcatgtggtcgctccttgaaggaagcttgtttcccttgctggcacgctaatgtc 429

                                                                       
Query: 181 cccactactctccagtgttcccatacagctcccactacttcccagaattccctgggtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cccactactctccagtgttcccatacagctcccactacttcccagaattccctgggtata 369

                                                                       
Query: 241 tggaaagaaaaggttctacagaatttataaggatgctcaggatttataagcagtgtctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggaaagaaaaggttctacagaatttataaggatgctcaggatttataagcagtgtctcc 309

                                                                       
Query: 301 tgtctttcaagtgtttgcatccaatctctgatggaacag----tgcatccccaaacgtga 356
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 308 tgtctttcaagtgtttgcatccaatctctgatggaacagcatttgcatccccaaacgtga 249

                                                           
Query: 357 tggtacagatggatgcccttacatactgatagaagctactgacacaag 404
           |||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 248 tggtaccgatggatgcccttacatactggtagaagctactgacacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 807
Length adjustment: 9
Effective length of query: 395
Effective length of database: 798
Effective search space:   315210
Effective search space used:   315210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)