BAC Information

Click to search

BAC

Clone NameMSMg01-497O24
Chromosome19 (Build37)
Map Location 9,990,500 - 9,990,710
singlet/doubletsinglet
Overlap genenone
Upstream geneGanab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp
Downstream geneLOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497O24.T7 (MSMg01no497_o24.b1)MSMg01-497O24.TJ (MSMg01no497_o24.g1)
ACCAG574385AG574386
length871929
length of high quality
(start - end)
211 (55 - 265)49 (77 - 125)
definitionCHROMAT_FILE: MSMg01no497_o24.b1 PHD_FILE: MSMg01no497_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:47 2005CHROMAT_FILE: MSMg01no497_o24.g1 PHD_FILE: MSMg01no497_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATGCTTTGTCCCTTTCTCCTTAGTCTGCCACACTTTCTTTT
GTGAAGTAGTACTTTCAGAAGTCATTACTGAATATCCTTAGTCCTTCATA
GACAGTAAATGCAATTGCTTGAATGCCCACTTGAGGGAGCCAGAGGACAA
GGCCGGCCAGCCACTGTGGTTCTAGGAAAGCTTTGCCTTTGGGTGGGTTG
GTTGTTTTTTGTTTGTTTTTTATCGTAGTGTCAGATAACTCAATTTAGAA
ACCCCGCTTTACCACCCTATGTTGTTTTTGTCGCCGCCTTTGTTTTCAGT
TTTGGATTTTACACGTCTTTTTTATATATCCCCTCTAAAATACTGAGAAT
AAGAAGTTTTATATTAAATGATTCTACCTTGCTGGCTTTTTTTCGTTTAT
TTTTATTTATAATATACGTCTAAAATTTTTCTTTTACTCACATCTATTAT
TATCATTTTATTTTTTTATTATTTCTTGCCTCATTATTTATGCACCTTTT
TTTTCACTCTCTTTTCTACCGCTTTTATCCCCTTTCTCTTCTTATATCTT
TTTTTTACTCACTCTATTCATTTCTATATTAAATTGTCTCCTGTCTGTAT
AGCGTTGTTTTGCTTAACTCTAATTAATTTTTTCTATCCCTCTTTATATT
TATTATTTTTGCTCCTGCGTCTCTCATATTTTACTTGCTATCCTGACTAT
ATATAATCTTATACTTGCTTTTCTCTAAATAATATTATGATACCTCACTT
TCTAAATTCCAAAATATCGTGATATATTTGTTCTTATGACTGAATCTGTT
GTTACCCGTTTTACCGTCATA
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTGAGAGAGTGTTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCGTGTGAGTNTNTNNTTTTTTTTTTAT
TTTTTCTTTTTCTTTCTTTTGGGGTGGTGTTTTCTTTTTTATTCCGCGTC
CGCCCTTCTTTTTTTTTTCCCCGCCGTTTTTATCCCCCTCCTTTTTTTTT
TTACTACATGGCTCCGCTATATATACGTACACCGGCGGAGCCGAGGCCCC
AGCGGCCGAGTTTTGCCTCCTTTTACACACCNCCCCCAAGCGCCAACGGT
AAAAAATACTTTTTTTTCCCCCCGCTTTTTATACCGTGTCTGCGATTTCC
CGCCGCGTGGCCTGATTTTATCTTTTTCCCCCCCCCAACACAAATAATAT
CTTTGTCCCTACTCTCTTCTCTCTTTTGTCTGCATCTGTCTCCCTCCATT
TCTGTTATTTTTTATCCACCGCTTTTTCACCTTTTTCGTTTTTCCACTTT
ATCTACTCTATCTACATCATTCCCTTTCTTCGCTTTTGTTTCTCTCGTCT
TCATATGACTTCGATTTCTCTGCTCACTTTAATATTCTAGTTTTGTTCTT
TCTTATACTATCGCTCCCTATCTTCGACAATGCCTCCATCTCTTTTTTAT
TATATCTCCCTATCCTCACTATATTATATAGCGCAATCACATCTCGCTCT
CTTTTTTTTCTTTTTATTATCCGGTGCACGCTTCTTCCCTTTAGATTCAA
TCGATATACTACCTGCCTCGCCACCTTCTATCCCTATATCTCTCANTATA
CTCGTAAGTGTAAAATATCCCAGTATTGTCTCTCACGCCCATCTGTTCTT
NGTCCATATTATCCATTAGTATGACGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_o24.b1 MSMg01no497_o24.b1 CHROMAT_FILE:
MSMg01no497_o24.b1 PHD_FILE: MSMg01no497_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:47 2005
         (211 letters)



>mm_chr19_9990300_9990910
          Length = 611

 Score =  369 bits (191), Expect = e-107
 Identities = 206/211 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgatgctttgtccctttctccttagtctgccacactttcttttgtgaagtagtactt 60
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgatgccttgtccctttctctttagtctgccacactttcttttgtgaagtagtactt 260

                                                                       
Query: 61  tcagaagtcattactgaatatccttagtccttcatagacagtaaatgcaattgcttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagaagtcattactgaatatccttagtccttcatagacagtaaatgcaattgcttgaat 320

                                                                       
Query: 121 gcccacttgagggagccagaggacaaggccggccagccactgtggttctaggaaagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccacttgagggagccagaggacaaggccggccagccactgtggttctaggaaagcttt 380

                                          
Query: 181 gcctttgggtgggttggttgttttttgtttg 211
           | |||||||| |||||||||||||| |||||
Sbjct: 381 gtctttgggttggttggttgtttttggtttg 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)