Query= MSMg01no498_a06.b1 MSMg01no498_a06.b1 CHROMAT_FILE:
MSMg01no498_a06.b1 PHD_FILE: MSMg01no498_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:53 2005
(700 letters)
>mm_chr19_37628095_37629194
Length = 1100
Score = 1282 bits (663), Expect = 0.0
Identities = 689/699 (98%), Gaps = 4/699 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactagaattctcttccatcagctttctgagtgccgagattacaaagattggcc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactagagttctcttccatcagctttctgagtgccgagattacaaagattggcc 263
Query: 64 accaactctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accaactctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcct 323
Query: 124 agtatggttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtatggttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttc 383
Query: 184 gaaactactggggcagtattgtga--agctactagtgaagctcacaacacacagccttct 241
||||||||||||||||||||| | || |||| |||||||||||||||||||||||||
Sbjct: 384 gaaactactggggcagtattgccatcag--actaatgaagctcacaacacacagccttct 441
Query: 242 gtagttacaagcatcttttgcacacgttcataaagtggagcaaactgaaagtgaagtcac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtagttacaagcatcttttgcacacgttcataaagtggagcaaactgaaagtgaagtcac 501
Query: 302 tttcagtaaccgtcgtagatataaataaagcctctgcaggacatacagaaaggggaaaca 361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 tttcagtaaccgtcgtagatataaataaagcctctgcaggacatagagaaaggggaaaca 561
Query: 362 aaagcattcaattcagttgtgtttgatagtcagtctcctagtattccattgtacttagca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagcattcaattcagttgtgtttgatagtcagtctcctagtattccattgtacttagca 621
Query: 422 atcagatgattaaatgattattcattaaatatctaggttttaaagttaaccgaagtctgg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atcagatgattaaatgattattcattaaatatctaggttttaaagttaaccgaagtctgg 681
Query: 482 taattatttttagacatgttaaaaagtgtcaaaataatgattcagtttatttgagtacag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taattatttttagacatgttaaaaagtgtcaaaataatgattcagtttatttgagtacag 741
Query: 542 acttgctgtcttagtaagggttttactgctgtgaaccaaggcaggtcttataaggacaac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acttgctgtcttagtaagggttttactgctgtgaaccaaggcaggtcttataaggacaac 801
Query: 602 gtttaattggggcagtgttggagtagtgttgctgggcagagttgtgttttcgttgccctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtttaattggggcagtgttggagtagtgttgctgggcagagttgtgttttcgttgccctg 861
Query: 662 gcttatttgggttggagatttaccgcaacagggctggct 700
| |||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtttatttgggttggagatttaccgcaacagggctggct 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_a06.g1 MSMg01no498_a06.g1 CHROMAT_FILE:
MSMg01no498_a06.g1 PHD_FILE: MSMg01no498_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:54 2005
(655 letters)
>mm_chr19_37787141_37788195
Length = 1055
Score = 1176 bits (608), Expect = 0.0
Identities = 644/656 (98%), Gaps = 2/656 (0%)
Strand = Plus / Minus
Query: 1 ctgtgtgttgtaagtgggcagatgttttaggaatgttcatattcagtgtgtggactctgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 670 ctgtgtgttgtaagtgggcagatgttttaggaacgttcatattcagtgtgtggactctgt 611
Query: 61 ctgggtatgaaaccttgctgttctgtgccttaccaggggacacacctgggtaaacagctg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgggtatgaaaccttgctattctgtgccttaccaggggacacacctgggtaaacagctg 551
Query: 121 ttgtcttcaggttccattttctgatttgatggcgctctatggacttggtgaatcaattca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttgtcttgaggttccattttctgatttgatggcgctctatggacttggtgaatcaattca 491
Query: 181 cagaaagcactgaggacgctcattggtgccaactaagtcctggaaataggagtcattatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagaaagcactgaggacgctcattggtgccaactaagtcctggaaataggagtcattatt 431
Query: 241 ctcttgaatagaaacagcacctgatccaaacataacctggacttatgctggggaactctg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctcttgagtagaaacagcacctgatccaaacataacctggacttatgctggggaactctg 371
Query: 301 ccctctgggtataatgtggcaactgccattttgaaattggagcagctatgattagccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccctctgggtataatgtggcaactgccattttgaaattggagcagctatgattagccaca 311
Query: 361 caagacataagatcaggtctttccgggcattcccttatgaagagagcagacagttcacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caagacataagatcaggtctttccgggcattcccttatgaagagagcagacagttcacaa 251
Query: 421 ggcctgacctcttagtcttatttgattggctagtttaaaagacttgttggag-aagaatg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 250 ggcctgacctcttagtcttatttgattggctagtttaaaagacttgttggagaaag-atg 192
Query: 480 aagactgaagagtggacactatgcctctccttagaattgggaacaaaacacctatggaag 539
|||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 191 aagactaaagagtggacactatgcccctccttagaattgggaacaaaacacccatggaag 132
Query: 540 gagttacagaaacaaagtttggagctgagacaaaaggatggaccatctagagactgccat 599
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 131 gagttacagagacaaagtttggagctgagacgaaaggatggaccatctagagactgccat 72
Query: 600 atgcagggatccaccccataatcagcttccaaacgctgactccattgcatacacta 655
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atccagggatccaccccataatcagcttccaaacgctgactccattgcatacacta 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
