Query= MSMg01no498_l16.b1 MSMg01no498_l16.b1 CHROMAT_FILE:
MSMg01no498_l16.b1 PHD_FILE: MSMg01no498_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
(593 letters)
>mm_chr19_34293373_34294365
Length = 993
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Plus
Query: 7 attctttagtttacctgctaacccatttaatccttgttacagcaatatcatcagtacctt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctttagtttacctgctaacccatttaatccttgttacagcaatatcatcagtacctt 266
Query: 67 tacttctcagtgtttcagatgccccaacagtataacttacctgtagtcacacaggtggct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacttctcagtgtttcagatgccccaacagtataacttacctgtagtcacacaggtggct 326
Query: 127 gattttctattgctaccatattgatttccttgaacttaatggctaaagaccgtctatatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gattttctattgctaccatattgatttccttgaacttaatggctaaagaccgtctatatt 386
Query: 187 catctcaggttttttgtgagacacgtatgtgagcttagcttacataaattctctatggta 246
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catctcagggtttt-gtgagacacgtatgtgagcttagcttacataaattctctatggta 445
Query: 247 tcttaaggttgaaattgagctgttggccttgtaaggacagattagggatctgtaatttgg 306
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 446 tcttaaggttgaaattgagctgttgaccttgtaaggacagattagggatctgtaatttgg 505
Query: 307 gtgttggtgggtaggggctcagctgtggctgtggttgtggttcctctttgaagttcttgt 366
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 gtgttggtgggtaggggctcagctgtggctgtggttgtggctcctctttgaagttcttgt 565
Query: 367 ggtttgggatagaattagctttcctgcagctgcagaactcctggcatctgactctcaaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtttgggatagaattagctttcctgcagctgcagaactcctggcatctgactctcaaaa 625
Query: 427 caagctgttcaaagtcccacttcctctggtgaagacctcatggccttttaattaagacca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caagctgttcaaagtcccacttcctctggtgaagacctcatggccttttaattaagacca 685
Query: 487 actgcttaagtggctttagtatatctgcaacatatcttcatctgtgatatataatggaac 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actgcttaagtggctttagtatatctgcaacatatcttcatctgtgatatataatggaac 745
Query: 547 ataatggtgggagcaatattcatttatcatgttccataggtagaaga 593
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ataattgtgggagcaatattcatttatcatgttccataggtagaaga 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_l16.g1 MSMg01no498_l16.g1 CHROMAT_FILE:
MSMg01no498_l16.g1 PHD_FILE: MSMg01no498_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:53 2005
(571 letters)
>mm_chr19_34450337_34451309
Length = 973
Score = 1042 bits (539), Expect = 0.0
Identities = 565/575 (98%), Gaps = 6/575 (1%)
Strand = Plus / Minus
Query: 1 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 714
Query: 61 tccttgagaatcttgactctttttttaggagtgaaattttccatttactaaaaaataagt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tccttgagaatcttgact-tttttttaggagtgaaattttccatttactaaaaaataagt 655
Query: 121 agattagattagtatgctca---aatgtttgcacaattccacacttaaaggagaaatgga 177
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 654 agattagattagtatgctcaaataatgtttgcacaattccacacttagaggagaaatgga 595
Query: 178 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgcagatttgttta 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 594 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgtagatttgttta 535
Query: 238 agaatctgaatgtatcagagttttctaactcaaaaataatcaaattgagacaaccctgtc 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agaatctgaatg-atcagagttttctaactcaaaaataatcaaattgagacaaccctgtc 476
Query: 298 cttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagatttttgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 475 cttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagacttttgt 416
Query: 358 ggataatggtgtggatagtggaggaagaagaagtgaaggtagggcaggtgagactggaag 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggataatggtgtggatagtggagaaagaagaagtgaaggtagggcaggtgagactggaag 356
Query: 418 tttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttag 296
Query: 478 gaagatactttctattctgcttgtactctgtgcagtgcccatggtctgccttttgtgtca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaagatactttctattctgcttgtactctgtgcagtgcccatggtctgccttttgtgtca 236
Query: 538 gtgaacaagataatttttt-ctttttatctatcag 571
||||||||||||||||||| |||||||||||||||
Sbjct: 235 gtgaacaagataatttttttctttttatctatcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space: 540243
Effective search space used: 540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
