Query= MSMg01no499_f21.b1 MSMg01no499_f21.b1 CHROMAT_FILE:
MSMg01no499_f21.b1 PHD_FILE: MSMg01no499_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:44 2005
(570 letters)
>mm_chr19_28095831_28096800
Length = 970
Score = 1052 bits (544), Expect = 0.0
Identities = 556/560 (99%)
Strand = Plus / Plus
Query: 11 ttcacccatattataaataagcaattcagtaaatattcacaatgcattgcagtcctttga 70
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttcacccatattaaaaataagcaattcagtaaatattcacaatgcattgcagtcctttga 270
Query: 71 tcaccacctttattaaaacacttctatgaattattgtaaaaggcctgcttgtggctctct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcaccacctttattaaaacacttctatgaattattgtaaaaggcctgcttgtggctctct 330
Query: 131 agtttgttctctttcaccctaatccctgtgctagcaaaagttggatcattcatatacata 190
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agtttgttctctttcacccttatccctgtgctagcaaaagttggatcattcatatacata 390
Query: 191 tatgtttcattttctaggacatcttataattggaacacatttacttaaaaacttctttga 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatgtttcattttctaggacatcttataattggaacacatttacttaaaaacttctttga 450
Query: 251 gtgtgtgttcttttgtttgacagactattttccatattattaccaatattagcagttatc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtgtgtgttcttttgtttgacagactattttccatattattaccaatattagcagttatc 510
Query: 311 ttgctgtgtaattggcatattgtatggatataccacaatttctttccaggtctttgcaat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgctgtgtaattggcatattgtatggatataccacaatttctttccaggtctttgcaat 570
Query: 371 gaacaagactgctgtacacatgtgtgtagaaatgttcttgtagacagacttctcatttaa 430
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaacaagactgctgtacacgtgtgtgtagaaatgttcttgtagacagacttctcatttaa 630
Query: 431 catcggcagacactggaaagtgaaattgaggagtgctgatttcatatcatggtgtccgag 490
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 631 catcggcagacactggaaagtgaaattgcggagtgctgatttcatatcatggtgtccgag 690
Query: 491 tgctttctctgtgcctttatcattctctgctttcaccaggaaaacatgagaattctagtt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgctttctctgtgcctttatcattctctgctttcaccaggaaaacatgagaattctagtt 750
Query: 551 ccattgacacctttgatcag 570
||||||||||||||||||||
Sbjct: 751 ccattgacacctttgatcag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_f21.g1 MSMg01no499_f21.g1 CHROMAT_FILE:
MSMg01no499_f21.g1 PHD_FILE: MSMg01no499_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:44 2005
(562 letters)
>mm_chr19_28262707_28263666
Length = 960
Score = 946 bits (489), Expect = 0.0
Identities = 544/565 (96%), Gaps = 9/565 (1%)
Strand = Plus / Minus
Query: 1 atatttttattcacgttaaaattttcctatgaacagggacttcatagaaaaagaagacct 60
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 560 atatttttattcacgttaaaattttcccatgaacagggacttcatag-aaaagaagacct 502
Query: 61 ggaagatatggttagactcagagacgcgtctcccctctcagccagaggtgggaagtctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagatatggttagactcagagacgcgtctcccctctcagccagaggtgggaagtctgg 442
Query: 121 gaagctgactgagacagtgagggggggaattgatgcctagggtcagtgttgtagagaaat 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gaagctgactgagacagtga-ggggggaattgatgcctaggatcagtgttgtagagaaat 383
Query: 181 ggcctgacagtaacggggagcagtaatggaagacagaggtgatttattaaagcctatttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 ggcctgacagtaacggggagcagtaatggaagacaaaggtgatttattaaagcctatttg 323
Query: 241 tgcatgtctgcccatctctgacctctgtctctggtgatgagacatgctctcacatcctga 300
|||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 322 tgcatgtctgcccatctctgacgtctgtctctggcgatgagacatgctctcccatcctga 263
Query: 301 cacaggaatattggggacgactgcgctattgtttctgggaaatttaggctctgcctttag 360
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 cacaggaatattggggatgactgcgctattgtttctgggaaatttagactctgcctttag 203
Query: 361 gcaaaacaaaaacaaaagcaaaaaa-taaaaaattaaaaaacaaaacagaaccaaaaatc 419
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 202 gcaaaacaaaaacaaaagcaaaaaaataaaaaattaaaaaacagaacagaaccaaaaaac 143
Query: 420 tttgcctgcatctattgagtcgttatctcaaaatggcaagtttggggatgatggccctaa 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 142 tttgcctgcatctattgagtcgttatctcaaaatggcaagcttggggatgatggccctaa 83
Query: 480 ttagcctca---ctcataaagagctaaatggaccagatgatacaagagaagtggggagcc 536
|| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 82 tt---ctcattgctcataaagagctaaatggaccagacgatacaagagaagtggggagcc 26
Query: 537 tggaacagagtaagataggatatac 561
|||||||||||||||||||||||||
Sbjct: 25 tggaacagagtaagataggatatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 960
Length adjustment: 10
Effective length of query: 552
Effective length of database: 950
Effective search space: 524400
Effective search space used: 524400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
