Query= MSMg01no499_g07.b1 MSMg01no499_g07.b1 CHROMAT_FILE:
MSMg01no499_g07.b1 PHD_FILE: MSMg01no499_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:46 2005
(194 letters)
>mm_chr19_57567842_57568434
Length = 593
Score = 253 bits (131), Expect = 4e-72
Identities = 179/197 (90%), Gaps = 8/197 (4%)
Strand = Plus / Plus
Query: 3 aaaaaaaa-aa--caaaggtggaaaaattctcactacactgtatcccaagtccagtgttg 59
|||||||| || ||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 200 aaaaaaaagaacccaaaggtgg-agaattctcactatactgtatcccaagtccagtgttg 258
Query: 60 tctta--tcctaccatcaaaatttctatgaatgtgtattttaaacttttattaatgattt 117
||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcttatttc--accatcagaacttctatgaatgtgtattttaaacttttattaatgattt 316
Query: 118 aatatatacgctggaaattgtttataagtctatagcttcatatgttttcaaagactgaac 177
||||| ||| | |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 317 aatatgtacacaggaaattgttcataagtctatagcttcatatgttttcagagactgaac 376
Query: 178 acatagggacaagtgtg 194
|||||| ||||||||||
Sbjct: 377 acatagtgacaagtgtg 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space: 108810
Effective search space used: 108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no499_g07.g1 MSMg01no499_g07.g1 CHROMAT_FILE:
MSMg01no499_g07.g1 PHD_FILE: MSMg01no499_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:46 2005
(233 letters)
>mm_chr19_57727951_57728584
Length = 634
Score = 408 bits (211), Expect = e-118
Identities = 229/237 (96%), Gaps = 7/237 (2%)
Strand = Plus / Minus
Query: 1 agcatgaggtcagagcacaaagtgcatgtttgtctacacacttgggataagcaatctaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcatgaggtcagagcacaaagtgcatgtttgtctacacacttgggataagcaatctaaa 375
Query: 61 agcaaagttagcaaagcaatct-cactgaacaccaaaaagcacaacgtgtttaggagtcg 119
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcaaagttagcaaagcaat-tacactgaacaccaaaaagcacaacgtgtttaggagtcg 316
Query: 120 atctacaaaaagagtttaaaactgaagttataaaaacacagctgaaatgttc---ttgat 176
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 315 atctacaaaaagagtttaaaactgaagttataaaaacacagctgaaatgtacaaa--gat 258
Query: 177 atgaatgggaaaacactccacattcagggatcccccgcctttgtccacagaggtgac 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgaatgggaaaacactccacattcagggatcccccgcctttgtccacagaggtgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 634
Length adjustment: 9
Effective length of query: 224
Effective length of database: 625
Effective search space: 140000
Effective search space used: 140000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
