Query= MSMg01no500_m15.b1 MSMg01no500_m15.b1 CHROMAT_FILE:
MSMg01no500_m15.b1 PHD_FILE: MSMg01no500_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:29 2005
(572 letters)
>mm_chr19_47607220_47608191
Length = 972
Score = 553 bits (286), Expect = e-161
Identities = 328/358 (91%), Gaps = 26/358 (7%)
Strand = Plus / Minus
Query: 217 atgccagagtatctgaaacaaccaaacaaacaaacaaacaaaaatagaggttaacaacta 276
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 972 atgccagagtatctgaaacaaccaaccaaacaaataaacaaaaatagaggttaacaacta 913
Query: 277 cagaagac--aaaatggtgccctgtaatgaatgtgcttgccttttgaacttggccctggg 334
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 cagaagacaaaaaacggtgccctgtaatgaatgtgcttgccttttgaacttggccctggg 853
Query: 335 caatagtctctcaatctttggaatttcctgagaaaaggagtgtctttgtactggaggtgg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 caatagtctctcaatctttggaatttcctgagaaaaggagtgtctttgtactggaggtgg 793
Query: 395 ggaccacaccttagtttatcgtaatggagcatgttatcagaatggtaatggagcatgtta 454
|||||||||||||||||||| ||||||||||||||||
Sbjct: 792 ggaccacaccttagtttatc------------------------gtaatggagcatgtta 757
Query: 455 tcagaatggacctatctatacccaattaattgagggttgggaatcaaagagagaccctat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tcagaatggacctatctatacccaattaattgagggttgggaatcaaagagagaccctat 697
Query: 515 ccacctgatcttggagggtgaggccatatgaccagtgaatccatcatacctacaccat 572
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccacctgatcttagagggtgaggccatatgaccagtgaatccatcatacctacaccat 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_m15.g1 MSMg01no500_m15.g1 CHROMAT_FILE:
MSMg01no500_m15.g1 PHD_FILE: MSMg01no500_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:29 2005
(584 letters)
>mm_chr19_47543464_47544447
Length = 984
Score = 1104 bits (571), Expect = 0.0
Identities = 580/583 (99%)
Strand = Plus / Plus
Query: 1 tagtcttagaaaatgaccaggctcccagaataccagaaggaaatctggtagcttgaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtcttagaaaatgaccaggctcccagaataccagaaggaaatctggtagcttgaacaa 260
Query: 61 ccaaagaagccaaaaacacagttagattcatagaggaaaagaaatattgttctgtaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaagaagccaaaaacacagttagattcatagaggaaaagaaatattgttctgtaactc 320
Query: 121 taggcagcatccctaatcctgcccagacatctggtccccagactagtgcgttctgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggcagcatccctaatcctgcccagacatctggtccccagactagtgcgttctgtttta 380
Query: 181 aggccttcagaaatgaagatgtggaagattccatagtatctgatcttagctactcaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccttcagaaatgaagatgtggaagattccatagtatctgatcttagctactcaacag 440
Query: 241 tgttggctaggctagagccatctgaatggagggaagatctggcagtgaggtactttctta 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tgttggctaggctagagccatctgaatggagggaagaactggcagtgaggtactttctta 500
Query: 301 attgatgattgacagggagggcccagccctttatgggtagtaccatccctgggccagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgatgattgacagggagggcccagccctttatgggtagtaccatccctgggccagtgg 560
Query: 361 tcttgggttccttaagaaagcaggccaagtggctggagagatggcttagcagttaagagc 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttgggttccttaagaaaacaggccaagtggctggagagatggcttagcagttaagagc 620
Query: 421 actgactgctcttccagaggtcctgagttcaaattccagcaaccacatggtggctcacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgactgctcttccagaggtcctgagttcaaattccagcaaccacatggtggctcacaa 680
Query: 481 ccatctgtaatgagattggatgccctcttctggtgtgtctgaagagagctacagtgtact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatctgtaatgagattggatgccctcttctggtgtgtctgaagagagctacagtgtact 740
Query: 541 tacatataataaataaataaatttttatagaataaagaaagaa 583
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tacatataataaataaataaatttttaaagaataaagaaagaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
