BAC Information

Click to search

BAC

Clone NameMSMg01-501C24
Chromosome19 (Build37)
Map Location 25,314,579 - 25,315,087
singlet/doubletsinglet
Overlap geneAnkrd15
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501C24.T7 (MSMg01no501_c24.b1)MSMg01-501C24.TJ (MSMg01no501_c24.g1)
ACCAG576847AG576848
length702715
length of high quality
(start - end)		545 (23 - 567)509 (57 - 565)
definitionCHROMAT_FILE: MSMg01no501_c24.b1 PHD_FILE: MSMg01no501_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:59 2005CHROMAT_FILE: MSMg01no501_c24.g1 PHD_FILE: MSMg01no501_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAAGTTTTGGGGGAAG
AACTGGAGGCAGAAATTTCTGAAACAGCCCGTATTGTCTGATAAGCCTCA
GCCGGGAGGTCAGAAAAGGTTAGATGAGGCTGATGCCTGGTTGTCTAGGC
TCTCCTTGTTATATGTTGGAGCATCTTTTGGGTATATGCCCAGGAGTGGT
ATATCTGGGTCCTCAGGTAATACTCTGTCCAATTCTCTGAGGAACTGCCA
AACTGATTTCCAGAGTGGTGGTACCAGCTTGCAATACCACCAGCAATGGA
GGAACGTTTCTGTTTCTCACATCCTCGCCAGCATCTGCTGTCACCAGAGT
TTTTGATCTTAGCCATTCTGACTGGTGTGAGTTGGAATCTCAGGGTCATT
TTCATTTGCATTTCCCTGATGACTAAGAATGTTGAACATTTCTTTAGGTG
CTTCTCAGCCATCCAGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTG
TACCCCTCTTTTAAATAGGGTTATTTGATTCTCTAGAGTCTACTTCTTGA
GTTCATTATATATATTGGATATTAGCCCTCTGTCAGATGTAGGATTGGTA
AAGATCTTTCCCCAATCTGTTGGTTGCTGTTTTGTCCTATTGACAAACAC
TGTTCTTTGCTTACAGAAGCTTTGCAATTTTTTGAGGNCTCATTTGTCTA
TT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAAGAGAGGGAAGAAAAGAAGTTGCAAGCCCCAGCTACACCAAG
CAGCCACACATGGATCCCAGCCCCCCAAGTCTTCAAAAGGAGCCCCCACA
GTGTGACGTGCAGGAGGCTTTCTTCCTATAAAGCCAAGTGTTGCCCTGCC
TTTCTGTTGGCTCTGTTACTTGGAATCTTCCTGAAAAAGAGTAAAGAATG
GCACACCACTTCTGCTGTCCTGGAAACCAACAGTACGTCCCTGTCCACTG
TGGAGGCCCCCTAGAGATGCTCAGTGGCCCTCAGCTCCCCTAAGATCCCT
TGAAGATCAGCCCAAGACTGACAACTCTCAGAAACTGCTCCTAAGCATCC
ACGGAAGAACCTGATTCAGAACTCAAACATAAACAGATAAAATAACCCTC
AGTCCCGAGCTAGAAGTTGCTGAACTTTACATTTTTGCATACTCTTTCTG
GACAAAGCAAACAAACCAACAAAACCCGACTTTATAGTAAGATCCTTCTT
TTTATCTCCTAAGGCCCCTGGCTCAGAGCCTCTGCCACAAAGTAGCACAC
AAAGAAAAACTGAACTTGTGACTGCTCAATGAAATTGCCACTTACTCTAT
TTAAAAGGAGACATANNGTCGCCNTGGCCATTATCTTCAGAATAGCATTT
CACCCCACAGAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_c24.g1 MSMg01no501_c24.g1 CHROMAT_FILE:
MSMg01no501_c24.g1 PHD_FILE: MSMg01no501_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:59 2005
         (509 letters)



>mm_chr19_25314379_25315287
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagagggaagaaaagaagttgcaagccccagctacaccaagcagccacacatggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caagagagggaagaaaagaagttgcaagccccagctacaccaagcagccacacatggatc 650

                                                                       
Query: 61  ccagccccccaagtcttcaaaaggagcccccacagtgtgacgtgcaggaggctttcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ccagccccccaagtcttcaaaaggagcccccacagtgtgacgtgcaggaggctttcttcc 590

                                                                       
Query: 121 tataaagccaagtgttgccctgcctttctgttggctctgttacttggaatcttcctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tataaagccaagtgttgccctgcctttctgttggctctgttacttggaatcttcctgaaa 530

                                                                       
Query: 181 aagagtaaagaatggcacaccacttctgctgtcctggaaaccaacagtacgtccctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aagagtaaagaatggcacaccacttctgctgtcctggaaaccaacagtacgtccctgtcc 470

                                                                       
Query: 241 actgtggaggccccctagagatgctcagtggccctcagctcccctaagatcccttgaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 actgtggaggccccctagagatgctcagtggccctcagctcccctaagatcccttgaaga 410

                                                                       
Query: 301 tcagcccaagactgacaactctcagaaactgctcctaagcatccacggaagaacctgatt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcagcccaagactgacagctctcagaaactgctcctaagcatccacggaagaacctgatt 350

                                                                       
Query: 361 cagaactcaaacataaacagataaaataaccctcagtcccgagctagaagttgctgaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cagaactcaaacataaacagataaaataaccctcagtcccgagctagaagttgctgaact 290

                                                                       
Query: 421 ttacatttttgcatactctttctggacaaagcaaacaaaccaacaaaacccgactttata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttacatttttgcatactctttctggacaaagcaaacaaaccaacaaaacccgactttata 230

                                        
Query: 481 gtaagatccttctttttatctcctaaggc 509
           |||||||||||||||||||||||||||||
Sbjct: 229 gtaagatccttctttttatctcctaaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |