BAC Information

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BAC

Clone NameMSMg01-501H06
Chromosome19 (Build37)
Map Location 59,140,903 - 59,141,380
singlet/doubletsinglet
Overlap gene4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501H06.T7 (MSMg01no501_h06.b1)MSMg01-501H06.TJ (MSMg01no501_h06.g1)
ACCAG577045AG577046
length725758
length of high quality
(start - end)
473 (63 - 535)323 (326 - 648)
definitionCHROMAT_FILE: MSMg01no501_h06.b1 PHD_FILE: MSMg01no501_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:17 2005CHROMAT_FILE: MSMg01no501_h06.g1 PHD_FILE: MSMg01no501_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCACTTTTTCATAGAAGGCGCGGAATTCCAGGGA
TACTTAAAATCGTCTGTACTGCCCTGTGTCAACAGTGGCTGGGGTGGGGC
TTGCCCTGTGACCTCAAATTCTCTGGTGAATCAAGAAGATTGTGTCATTT
ATTTGCCTTTTTGTTGTTGTTATGAAGAATGTATGACGTACAAGTCTACA
TGCTAGGCTAGACACCACACACACACACGTAGTATATTTTATTATAGATG
TACCATATGTATATATATATAATAGATAATATATCACGAAGCTCTTAGGT
TTCCTTTCNCTCGTTTTTAATTTGAAGCCATTCTTGTGGTTTGTTGAGAG
TACTTCTTCAGCATTCTTCTTTATTAGCACTGAACTGTGTTTTACCTAGC
GTTGATGAAGCTCAGGTTTGCCGTAATTTCTTTCCTGATAGGAAATCTGT
CACCTTTGTTTTTTTTGATCAGCTTTCCCAGCGGTCCCCCCACCCCACCC
CTGGCTTTTATAATGATTTAATTAACAAGGGAGGTATAAATGGATTCCCT
CTCAACTCTGGCTCTAAGTGGAGCATCCGCTGGGACGTGAACAGAAGGGG
AGCCTGTCCTAATTGAGCAATTCCCTTTATGACGTGTTCTCATCTCCCTT
TATTTTGGTTTCAAGGCTCCTTGAGTCTGACAGGCAGACTCAGCCCTTGC
GTGGGACTCTGCATTAGGAAATGTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCGCAGAAATGGGCACAAAGGTATCTAGAATGGCCAAGAA
GCACTTAAAGAAATGTTCAAAGTCCTTAGTTATCAGGGAAATGCAAATCA
AAACAACTCTGAGCTTCTACCTTACACCCGTCAGAATAGCTAAGATCAAA
CACTCAAGTTGGCACACACTGGCGAGGATGTGGAGAAAGGGGAACACTCC
TTCATTGCTGGTGCGAGTGCAAGCTGGTACCACCACTCTGGAAATCAGTC
TGGTGGTTGCTCAGAAATTTTGGTTACAGTTCTACTTCAAGATCCAGCAA
TACCATTACAGAGCATGTACCCAAAAGATGCCCCACCATCCCACAAGGAC
ACTTGCTCAACTATGTTCATAGCAGTTTTATGAAACACCTCAGATGCCCC
TCAATGGAAGAATGAATAAAGAAAACATGGTACATTTACACAATGGAATA
CTACCCAGCTATTAAAAACCAGGAAATCATAAAATTTGCAGGCAAATAAT
TGAACTAGAAAATATCATCCTGAATGAGATAACCCAGACCCAGGAAGACA
TCCATGGTATGTACTCACTTATAAATGGATATCAGCCAGAAAATACAGGA
TAACCTTGCTACAATTCAGAGACCCAAAGAAGCTAAGCTAACAGGAGAGC
TCAAGGGAGGGTACTTGAATCTCACTCAGAGGGGAAATAAAAAAGAAACT
GGGTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_h06.b1 MSMg01no501_h06.b1 CHROMAT_FILE:
MSMg01no501_h06.b1 PHD_FILE: MSMg01no501_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:17 2005
         (473 letters)



>mm_chr19_59140549_59141426
          Length = 878

 Score =  843 bits (436), Expect = 0.0
 Identities = 466/479 (97%), Gaps = 7/479 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtactgccctgtgtcaacagtggctggggtggggcttgccctgtgacctcaaattct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 832 tctgtactgccctgtgtcaacagtggctggggtggggcttgtcctgtgacctcaaattct 773

                                                                       
Query: 61  ctggtgaatcaagaagattgtgtcatttatttgcctttttgttgttgttatgaagaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctggtgaatcaagaagattgtgtcatttatttgcctttttgttgttgttatgaagaatgt 713

                                                                       
Query: 121 atgacgtacaagtctacatgctaggctagacaccacacacacacacgtagtatattttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 712 atgacgtacaagtctacatgctaggctagacaccacacacacacacgtagtatattttaa 653

                                                                       
Query: 181 tatagatgtaccatatg----tatatatatataatagataatatatcacgaagctcttag 236
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tatagatgtaccatatgtatatatatatatataatagataatatatcacgaagctcttag 593

                                                                       
Query: 237 gtttcctttc--nctcgtttttaatttgaagccattcttgtggtttgttgagagtacttc 294
           |||| |||||   || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gttttctttcttcct-gattttaatttgaagccattcttgtggtttgttgagagtacttc 534

                                                                       
Query: 295 ttcagcattcttctttattagcactgaactgtgttttacctagcgttgatgaagctcagg 354
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 533 ttcagcattcttctttattagcactgaactgtgtttcacctagcgttgatgaagctcagg 474

                                                                       
Query: 355 tttgccgtaatttctttcctgataggaaatctgtcacctttgttttttttgatcagcttt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tttgccgtaatttctttcctgataggaaatctgtcacctttgttttttttgatcagcttt 414

                                                                      
Query: 415 cccagcggtccccccaccccacccctggcttttataatgatttaattaacaagggaggt 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cccagcggtccccccaccccacccctggcttttataatgatttaattaacaagggaggt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 878
Length adjustment: 10
Effective length of query: 463
Effective length of database: 868
Effective search space:   401884
Effective search space used:   401884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)