Query= MSMg01no501_l20.b1 MSMg01no501_l20.b1 CHROMAT_FILE:
MSMg01no501_l20.b1 PHD_FILE: MSMg01no501_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:37 2005
(579 letters)
>mm_chr19_38685371_38686349
Length = 979
Score = 1036 bits (536), Expect = 0.0
Identities = 569/580 (98%), Gaps = 2/580 (0%)
Strand = Plus / Plus
Query: 1 atgtggaatcaagaacagaggaaacacagactgctgccaaaatgtggctccctgtcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtggaatcaagaacagaggaaacacagactgctgccaaaatgtggctccctgtcctct 260
Query: 61 tcattaggtctgaagccactgcagtcgccacccctcctgtttttctttgcccctaggcaa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgttaggtctgaagccactgcagtcgccacccctcctgtttttctttgcccctaggcaa 320
Query: 121 tttgatagtcttttaaatcattgcctttggttgacatatgaaaactccatgagaaattgt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgatagtcttttaaatcgttgcctttggttgacatatgaaaactccatgagaaattgt 380
Query: 181 cttcaacctttgagaattctctagaaccttctagaacactgcttttagattccagccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcaacctttgagaattctctagaaccttctagaacactgcttttagattccagccatc 440
Query: 241 gagagatgctaataaaagggaattccaaaccaatgcactctatgcatcttttattatatt 300
|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gagagaagccaataaaagggaattccaaaccaattcactctatgcatcttttattatatt 500
Query: 301 ctggaagggagattccccatcttattatttacctattaacttatgattaacagagctcaa 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctggaagggagattccccatcttattatttacctatta-cttatgattaacagagctcaa 559
Query: 361 tagctcttgattatttgtttttctagcccaggatactctagaaagcattagcatagggga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 tagctcttgattatttgtttttctagcccaggatactctaaaaagcattagcatagggga 619
Query: 421 ggacagggtgctgttagaagtagatgtactgtcactgttgatgtgatcgccgacattgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggacagggtgctgttagaagtagatgtactgtcactgttgatgtgatcgccgacattgac 679
Query: 481 catcactgtt-ggaaggagggagcataagagttgatctgagttagagaagaatgatcatc 539
|||||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 680 catcactgataggaaggagggagcataagagtcgatctgaattagagaagaatgatcatc 739
Query: 540 aaaataagcaaaattggtccgagagatggctcaatggtta 579
||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaataagcaaaattggtccgagagatggctcaatggtta 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_l20.g1 MSMg01no501_l20.g1 CHROMAT_FILE:
MSMg01no501_l20.g1 PHD_FILE: MSMg01no501_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:37 2005
(306 letters)
>mm_chr19_38865161_38865866
Length = 706
Score = 576 bits (298), Expect = e-169
Identities = 304/306 (99%)
Strand = Plus / Minus
Query: 1 tacccatgtggcctatgatgggcacaaacttaaccacataagaatttatatgtgatgatc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tacccatgtggtctatgatgggcacaaacttaaccacataagaatttatatgtgatgatc 577
Query: 61 ttacagtcttgatccctttccctgtactcccaaggactgggattataggtgtgccccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttacagtcttgatccctttccctgtactcccaaggactgggattataggtgtgccccact 517
Query: 121 atgcctggctagttgtttccttttaagattggaaaacttcacttaaaattgacttcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgcctggctagttgtttccttttaagattggaaaacttcacttaaaattgacttcctgc 457
Query: 181 ttgtcttgaaatactacatttagttatttcatatggaagattttgtttagatttaattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttgtcttgaaatactacatttagttatttcatatggaagattttgtttagatttaattat 397
Query: 241 gtgtgtgtttggtatacatatatgtttgtgtaccatgtgcgtgctgcgtgcttatggccc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 396 gtgtgtgtttggtatacatatatgtttgtgcaccatgtgcgtgctgcgtgcttatggccc 337
Query: 301 cctgaa 306
||||||
Sbjct: 336 cctgaa 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
