BAC Information

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BAC

Clone NameMSMg01-501N07
Chromosome19 (Build37)
Map Location 26,690,868 - 26,691,193
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneDmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501N07.T7 (MSMg01no501_n07.b1)MSMg01-501N07.TJ (MSMg01no501_n07.g1)
ACCAG577332AG577333
length719701
length of high quality
(start - end)
567 (74 - 640)326 (310 - 635)
definitionCHROMAT_FILE: MSMg01no501_n07.b1 PHD_FILE: MSMg01no501_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:43 2005CHROMAT_FILE: MSMg01no501_n07.g1 PHD_FILE: MSMg01no501_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAGGCGCGGAATTCTCGCCC
TTTCCAAAAATACGGCAGAGNGNTCTAAATTATTAGCCTACATTCCATTA
TTTCACACTCAGGCTCATTGTTGGTGATGTACAGCTTACAGTTCTAACCC
ATACACAACAACCTGTATCTACCATTACAGTAACATGCAGAATAACTTGG
CTGCCCGAAAGTGTTCCCTGCTCCTGCTTTCTGTTTCCACCATACTCATG
TCTTCCCTTGAATGTCCAGTGAGTGACAGGCTATGGCAGTTCCAGGCCAG
CTTCTTTTGTTTTTTCTCCATGTCTGCCATGGCTCAATTGTTCCTTTTGG
GGCCCTGAGCAATATTCTGTTGTCTGTACCACAGTGCTTCTACTTACCTG
GAAAAGGACGTCTTGGTTGGCTCCTTCCAAGTTTTGGAAGTTATAATAAA
CCTGCTGTAAATATTCATATGTAGGTTTCTGTATGCACATTTTTACTTTT
TCTTCTTTTTTTTTCCTTCCCTTTTTAAATTTCTCAGAGTCCAGGCTGGC
CTCAAACTCAATCTGCTGGCTATTTATTTATTTAGTCAACTTGACACAAA
CTAGAGTCTTCTGGAAAGAGGGAACCTCCTTTGAAAAAATACCTCCATCA
GACTGGCCTGTAGGCAGGACTATGGGGGGCATTTTCCTGATGAGTGTGAA
AGGCCCATCTCATTGTGTG
CCTGGCGGCCGCCTGTTTCAAACAGGGGGTGACCTATAGAAGGTTCGCAA
AAGTCTTGCCAAGAACACAGTGGCCTGGCCCTTTGGGAGTCCTGGTCTGA
GACGAAGAGTAATGTGGCAGGGAGGGAAATGGGGCTGCATTGCGAGTGTC
TGGGTGGCAGCTGGGCTCTTGCCCAGGCAGATTTCCTTCAGTGAGTTTCA
TCACTTGGACAATCCTATCATCTGGGATTATTAGCCCTGCACCTCTCCCA
TTGTGTTCCTGGGACCATCTCCTTATCTATCCCACCTGGTGCTTTGAAGA
TTTATGTTTGTGGCAAGGATTTGAATGGACACAAGGAGAGAGCTGAGTTG
GCTGACCTAGACTTGAAGCCCTTATTGCTGACTCAGTAATAACATGCTCC
CTGCCTTGAGATTTGCATCTCGGATTTGTAGCTCTAAGGGTCTTTATAAT
AACAATATAGGATCGTGCCATGGTGCATTTGAGCTAAAGAGTAAAGTTGC
CACCAGAAATGTAGAGGAAGAATAAGAGTGGACCTTCTGGCTTCAACTCT
TCTTCCTGTGAGTGCTTGAGAGATGGACAGTCCTGGCTTTGGCATAAGAG
CCTATTCAGGAACTCGAGCAAGCCCAGGGCAGGAATGGGGTCTTGGAGAG
TCTCTGGATGATGATAGACACCAAGTCATAGGTAGATAGATGGAGGGGGT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_n07.g1 MSMg01no501_n07.g1 CHROMAT_FILE:
MSMg01no501_n07.g1 PHD_FILE: MSMg01no501_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:44 2005
         (326 letters)



>mm_chr19_26690668_26691393
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 323/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggcaaggatttgaatggacacaaggagagagctgagttggctgacctagacttgaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggcaaggatttgaatggacacaaggagagagctgagttggctgacctagacttgaagc 260

                                                                       
Query: 61  ccttattgctgactcagtaataacatgctccctgccttgagatttgcatctcggatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttattgctgactcagtaataacatgctccctgccttgagatttgcatctcggatttgt 320

                                                                       
Query: 121 agctctaagggtctttataataacaatataggatcgtgccatggtgcatttgagctaaag 180
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 agccctaagggtctttataataacaatataggattgtgccatggtgcatttgagctaaag 380

                                                                       
Query: 181 agtaaagttgccaccagaaatgtagaggaagaataagagtggaccttctggcttcaactc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaagttgccaccagaaatgtagagaaagaataagagtggaccttctggcttcaactc 440

                                                                       
Query: 241 ttcttcctgtgagtgcttgagagatggacagtcctggctttggcataagagcctattcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcctgtgagtgcttgagagatggacagtcctggctttggcataagagcctattcag 500

                                     
Query: 301 gaactcgagcaagcccagggcaggaa 326
           ||||||||||||||||||||||||||
Sbjct: 501 gaactcgagcaagcccagggcaggaa 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)