BAC Information

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BAC

Clone NameMSMg01-502G06
Chromosome19 (Build37)
Map Location 12,834,846 - 12,835,429
singlet/doubletsinglet
Overlap genenone
Upstream geneGif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1
Downstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G06.T7 (MSMg01no502_g06.b1)MSMg01-502G06.TJ (MSMg01no502_g06.g1)
ACCAG577756AG577757
length740748
length of high quality
(start - end)
584 (62 - 645)589 (75 - 663)
definitionCHROMAT_FILE: MSMg01no502_g06.b1 PHD_FILE: MSMg01no502_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005CHROMAT_FILE: MSMg01no502_g06.g1 PHD_FILE: MSMg01no502_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TTTCTCCCTGAGGGTTCATCATTTTGGTGGAGGCCTGATTCCTATGTCTC
AAGTTTACCCCTTAAGAAAAGTCATAAATGAGCTGATGCTCTGGTACCCA
TAATCAAGTCACTCAAAACCACTTACCGTTTTTCCTCCCTCTGAGCAAAG
GTCAGAACAGTGTCATTCATTCATTCATTCATTGGGCTGTCACTCACAGC
AGCCTAAAATAACAGCAATACTAGGGCTATGACTTTATACTCTCAGGTTT
TATAAAAATGTTTTCTTCCTTCAATTCCTAGTATCTTAAAGCTGATTCTA
TTCTACACTTGGCTTCAAGTTTGTGCTAATTTGTAAGCCTTTCAAATCAT
CAACTTGCAAATTTGTCAGGCCTCATTCATGCAATTTAAGGAAACAGAAT
GACTCTTCAGAAAGGGCTAAAAAAATTTTTTTTGGGGGGGAGGGGAGATC
TCTGGGATTTTTAATTTTTTAAAAATAATGTAAAGGTTAATGGTGAGAAA
CTGAAATTTGTATATCTTAGTATGATTTTCTAGAGATTCTATGCATAGAA
TCACTTATTTTGTGAGTCACTGGGTTTCACGAACATTGAAACACATCCTA
CTCCCCGAGCTCAGCAAGATATTTGTTGTCATATAAGCTATGAAAAGAAT
CAGTGTGTCCACAGTACCTGTTTTATGAAGATACACCTAG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGGTCTGTTCCCCATTTTT
AATTGGGATATTTGTTTCTCTGAAGTTTAACTTCTAGACTTTGTTGTATA
TATTGGATATTAGCCCTCTATCCGATGTAGGATTGTTAAAGATGTTTTCC
CAATCTGTTGGTTGCCATTTTGTCCTATTGACAGTGCTTTTTTGCCTTAC
AGAAGCTTTCCGATTTTATGAGGTCCCAATTGTCAATTATTGATCTTAGA
GCATAAGCCATTTGTGTTCTGTTTATGAGCTTTCCCCCTGTGTCCCCTGT
TCTATTAGATTCAGTGTATCGGGTTTTATGCGGAAGACCTTGATCCACTT
GGACTTGAGCCTTGTACACGGAGATAAGAATGGATCAATTTGCTTTCTTC
TACAAGTTGACCACTAGTTGAACCAGCACCAATTGTTGAAAATGCAGTCC
CCCCCCCCACTGAATGGTTTTAGATCCTTTGTCAAAGATCAAGTGATCAT
AGGTGTGTGGGTTTATTTCTGTGTCTTCAATTCTATTCCATTGATCTATC
TGCCTGTCTCTGTACCAATACCATGCAGTTTTTATTACGATTGCTCTGTA
GTACAGCTTGATGTCAGGGATGGTGATTCCCCCAGAAATTCTTTTATTGT
TGAGAATAGTTTTCCCTGTCCTGGGTTTTTTATAATTTCCAATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g06.b1 MSMg01no502_g06.b1 CHROMAT_FILE:
MSMg01no502_g06.b1 PHD_FILE: MSMg01no502_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:25 2005
         (584 letters)



>mm_chr19_12834646_12835629
          Length = 984

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggttcatcattttggtggaggcctgattcctatgtctcaagtttaccccttaagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggttcatcattttggtggaggcctgattcctatgtctcaagtttaccccttaagaaaag 260

                                                                       
Query: 61  tcataaatgagctgatgctctggtacccataatcaagtcactcaaaaccacttaccgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataaatgagctgatgctctggtacccataatcaagtcactcaaaaccacttaccgttt 320

                                                                       
Query: 121 ttcctccctctgagcaaaggtcagaacagtgtcattcattcattcattcattgggctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctccctctgagcaaaggtcagaacagtgtcattcattcattcattcattgggctgtc 380

                                                                       
Query: 181 actcacagcagcctaaaataacagcaatactagggctatgactttatactctcaggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcacagcagcctaaaataacagcaatactagggctatgactttatactctcaggtttt 440

                                                                       
Query: 241 ataaaaatgttttcttccttcaattcctagtatcttaaagctgattctattctacacttg 300
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaaatgatcacttccttcaattcctagtatcttaaagctgattctattctacacttg 500

                                                                       
Query: 301 gcttcaagtttgtgctaatttgtaagcctttcaaatcatcaacttgcaaatttgtcaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttcaagtttgtgctaatttgtaagcctttcaaatcatcaacttgcaaatttgtcaggc 560

                                                                       
Query: 361 ctcattcatgcaatttaaggaaacagaatgactcttcagaaagggctaaaaaaatttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 561 ctcattcatgcaatttaaggaaacagaatgactcttcagaaagggctaaaaatttttttt 620

                                                                       
Query: 421 ttgggggggaggggagatctctgggatttttaattttttaaaaataatgtaaaggttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgggggggaggggagatctctgggatttttaattttttaaaaataatgtaaaggttaat 680

                                                                       
Query: 481 ggtgagaaactgaaatttgtatatcttagtatgattttctagagattctatgcatagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgagaaactgaaatttgtatatcttagtatgattttctagagattctatgcatagaat 740

                                                       
Query: 541 cacttattttgtgagtcactgggtttcacgaacattgaaacaca 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacttattttgtgagtcactgggtttcacgaacattgaaacaca 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)