BAC Information

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BAC

Clone NameMSMg01-502H01
Chromosome19 (Build37)
Map Location 12,834,298 - 12,834,823
singlet/doubletsinglet
Overlap genenone
Upstream geneGif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1
Downstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502H01.T7 (MSMg01no502_h01.b1)MSMg01-502H01.TJ (MSMg01no502_h01.g1)
ACCAG577794AG577795
length783692
length of high quality
(start - end)
45 (67 - 111)527 (57 - 583)
definitionCHROMAT_FILE: MSMg01no502_h01.b1 PHD_FILE: MSMg01no502_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:28 2005CHROMAT_FILE: MSMg01no502_h01.g1 PHD_FILE: MSMg01no502_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTANATCGAGACCATCCGCGGAATTCCCTGAC
CTCCTGCTCTCGGATCAGAAAAGAGTGCACAAAGAGGGAAAGGAAGTATT
GCAGAAGTAGACGAAGGGCACAGGGAGGTGAATGTGGAGATGGAGGATGT
GTGTAAGGTACAGTGGGGAGGGGGTCNNCNNNCCCCCCCCCCCCCCCCCC
CCCNCCNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCTTTTTCTCCC
CCCCCTCCCTCCCCCCCCCGCCCCCTCCTCCCCCCTCCCCTCCCCCCCTC
CCCTCTTTTTTTTTTCTTNNCCCCCCNCGCCCGCNCGCCCCNNGNNNTTT
TTTCCCCCCCCCCCCCNCTTCCCCCCCCCCCTCCTCCCCTCCCTCTTCCC
TCTCTCCTCCCCCCCCCCCCCTTTTTTCTCCCCCGTCCCCCTTCCCTCCT
TCCCCCTCCTCCCTCCCCCTCCTTGCTTTTCCCTCCTTCCCCCCTCCTTC
CCCCCCCTTCCCCTCCCTCCCTCCNCCCCTTCCCCCCCCCCCCCCCCCNN
TTCCCCCCCCCTTACTTCAGTTCCCCTCTACCTCCACCCCCCTCTCCTCC
CTCCTTCCCCCCCTCCCTCCCCCTCCTTTCCGCCCCCTCCNCNACCTCCC
CCCTCTCCCCCTTCCCTCCCTCCCTTTCTCCCTTTCCCTCCCCTCTCTTT
TTTCCCTTCCCCTCCTCCCCCTCGCTCCCTNCCGCCCCTCCCCCCCCCCG
NTACCTNCTCTCTCCCCCCCTCCCCCCTCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
AAAATTCAATTGATTGTGACATGTGTGATATGCGGTTTGGGAATTATTTA
AAGAAAATGGTCTGGCCTCTAAACTTTGAGTTTCATGGTCAAAAAATGAG
CCCCGTGAATGCTGGTGCACATTAAAAAGTGAAAATCAGTAAAAATCATC
TCACCACAAAAGCTTTTAAAGAACTCTGACAGTCACTGGTAAATAGAAGA
AAAAAATGAAATATTTGGTGTTCAAAATAAATATCCATGTGCTTGAGATT
CTTATTTTATAGAATGTTTCTTGGGTCAATCTATTTTGGGCACATAGAAA
ATAAAAGATGCAAGAATGGCTAACAATAGAGTTCTCTTCTCAGCAAGACC
ACAAGATGCTTCCTTTATTTCTGTGTCTTTGGATGAACAAGGGGAATTTC
AAGTGATTTCAACACTGGATAAAATGTAATCCTCTCAGCCAGGGCCAGAC
TCAATCAAGCATGCTGGGTAAATCTGCATGATGCCAGGCCACTGGGCAAA
AATCCCAGGGGCAGGCAGCCTGGAAGAGGACCACACCACCAAGCCAAATG
CTTCTGCAACACTGTGAATGTGTAGTTGAATCGACTAGGCTGTAATTAAG
AAGGTTTAATTTCATTCCACATGTTTTATTCTCAGTTAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_h01.g1 MSMg01no502_h01.g1 CHROMAT_FILE:
MSMg01no502_h01.g1 PHD_FILE: MSMg01no502_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:28 2005
         (527 letters)



>mm_chr19_12834098_12835023
          Length = 926

 Score =  975 bits (504), Expect = 0.0
 Identities = 521/530 (98%), Gaps = 7/530 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattgattgtgacatgtgtgatatgcggtttgggaattatttaaagaaaatggtctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caattgattgtgacatgtgtgatatgcggtttgggaattatttaaagaaaatggtctggc 667

                                                                       
Query: 61  ctctaaactttgagtttcatggtcaaaaaatgagccccgtgaatgctggtgcacattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctctaaactttgagtttcatggtcaaaaaatgagccccgtgaatgctggtgcacattaaa 607

                                                                       
Query: 121 aagtgaaaatcagtaaaaatcatctcaccacaaaagcttttaaagaactctgacagtcac 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagtgaaaatcggtaaaaatcatctcaccacaaaagcttttaaagaactctgacagtcac 547

                                                                       
Query: 181 tggtaaatagaagaaaaaaatgaaatatttggtgttcaaaataaatatccatgtgcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggtaaatagaagaaaaaaatgaaatatttggtgttcaaaataaatatccatgtgcttga 487

                                                                       
Query: 241 gattcttattttat---agaatgtttcttgggtcaatctattttgggcacatagaaaata 297
           ||||||||    ||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gattctta----ataaaagaatgtttcttgggtcaatctattttgggcacatagaaaata 431

                                                                       
Query: 298 aaagatgcaagaatggctaacaatagagttctcttctcagcaagaccacaagatgcttcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 430 aaagatgcaagaatggctaacaatagagttctcttctcagcaagaccacaagatgcttct 371

                                                                       
Query: 358 tttatttctgtgtctttggatgaacaaggggaatttcaagtgatttcaacactggataaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttatttctgtgtctttggatgaacaaggggaatttcaagtgatttcaacactggataaa 311

                                                                       
Query: 418 atgtaatcctctcagccagggccagactcaatcaagcatgctgggtaaatctgcatgatg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgtaatcctctcagccagggccagactcaatcaagcatgctgggtaaatctgcatgatg 251

                                                             
Query: 478 ccaggccactgggcaaaaatcccaggggcaggcagcctggaagaggacca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccaggccactgggcaaaaatcccaggggcaggcagcctggaagaggacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)