BAC Information

Click to search

BAC

Clone NameMSMg01-502J03
Chromosome19 (Build37)
Map Location 30,523,588 - 30,523,923
singlet/doubletsinglet
Overlap genenone
Upstream genePdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
Downstream geneLOC668020, EG546723, Dkk1, Prkg1, LOC625995, Cstf2t, 8430431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502J03.T7 (MSMg01no502_j03.b1)MSMg01-502J03.TJ (MSMg01no502_j03.g1)
ACCAG577893AG577894
length698681
length of high quality
(start - end)
640 (36 - 675)337 (309 - 645)
definitionCHROMAT_FILE: MSMg01no502_j03.b1 PHD_FILE: MSMg01no502_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:39 2005CHROMAT_FILE: MSMg01no502_j03.g1 PHD_FILE: MSMg01no502_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTTCTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGA
ATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTAGTAA
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTGGTATGCTGTCATGTTCTGAGTGTGAGTCCTAGTACTGA
AAATCAAATCAAAACAAAACAAAACAAAACATCAAAAATGAAGAAAGAAA
AAGAAAAAGCTCATGTCAAATAAAGAAAAGAACTAACTAACATTAAAATG
CTACTTGTGGATATTCTTCCCACTACTGCTTTATCGAGGTGAGGTCTTGC
TAAACATAGTTTTAGGTTCTGAGGGTGACCTTGAACTTTCCAAGTAGCCC
TATCTTATTTTGAACTAACAATCTTCTTGTCTCAACCTTCTAAGTACTGG
GATTGCAGGCACGTATCACCATTTCTAGCATCAATTATTTTTTATATAAT
TATGAGTCATTTGGTCTTATGATTAAGTTAATTATTTATATCAATATTAT
ATACCATAAATGTGTATGTGTTTATTTAGAATATTCAGTTGGTAGATACA
AAAAGTGAAGCTAAAAAGAAATGTGGGAAATCCAATATTCTAATCTATCC
ATGCATTGCTGGAGACTGGGGTCAGTGGGTCCTGGTGCCTTCTCATCCTC
ACGACCACTGAGAGAACATCAGGGTGACTGGATGGAAAGAGAGCAGACAC
CAGGGGAAATGCAAAAAAAATGACAAACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_j03.g1 MSMg01no502_j03.g1 CHROMAT_FILE:
MSMg01no502_j03.g1 PHD_FILE: MSMg01no502_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:39 2005
         (337 letters)



>mm_chr19_30523387_30524123
          Length = 737

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgaactaacaatcttcttgtctcaaccttctaagtactgggattgcaggcacgtatcac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 202 ttgaactaacaatcttcttgtctcaaccttctaagtactgggattgcaggcacatatcac 261

                                                                       
Query: 62  catttctagcatcaattattttttatataattatgagtcatttggtcttatgattaagtt 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacttctagcatcaattattttttatataattatgagtcatttggtcttatgattaagtt 321

                                                                       
Query: 122 aattatttatatcaatattatataccataaatgtgtatgtgtttatttagaatattcagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aattatttatatcaatattatataccataaatgtgtatgtgtttatttagaatattcagt 381

                                                                       
Query: 182 tggtagatacaaaaagtgaagctaaaaagaaatgtgggaaatccaatattctaatctatc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggtagatacaaaaagtgaagctaaaaagaaatgtgggaaatccaatattctaatctatc 441

                                                                       
Query: 242 catgcattgctggagactggggtcagtgggtcctggtgccttctcatcctcacgaccact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catgcattgctggagactggggtcagtgggtcctggtgccttctcatcctcacgaccact 501

                                               
Query: 302 gagagaacatcagggtgactggatggaaagagagca 337
           ||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagagaacatcagggtgactggatggaaagagagca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)