BAC Information

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BAC

Clone NameMSMg01-502K03
Chromosome19 (Build37)
Map Location 36,088,831 - 36,089,281
singlet/doubletsinglet
Overlap geneHtr7
Upstream geneLOC383464, LOC100042292, A830019P07Rik
Downstream geneRpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K03.T7 (MSMg01no502_k03.b1)MSMg01-502K03.TJ (MSMg01no502_k03.g1)
ACCAG577941AG577942
length740742
length of high quality
(start - end)
449 (75 - 523)659 (76 - 734)
definitionCHROMAT_FILE: MSMg01no502_k03.b1 PHD_FILE: MSMg01no502_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005CHROMAT_FILE: MSMg01no502_k03.g1 PHD_FILE: MSMg01no502_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCTGAGAGTTCTCGGAGGCCAGTCTGCTTTCATATGTAAGATGTCCAG
TTTAGCCCCTTGTCTCAGGGCCTGAAACCAAGCAGGTGGGTTCTAGTTCA
ATAAGATACACAGTAAGAAGAACTAGAAATCTTTTCCAAGTACAAAGTAC
AATTTGGGGTGCCAAATGCTTTGAGTTAACACAAAGCGATACAAAGACAC
AAGATACGGTCACAACTATTGGAACTGTCAAGGAGAGAGAAGAAAATCAA
ACCACAGAAAAGAATGTATTTGTGAAACAGTCCTTCAAAGAATTTTTTTT
TTTTCTGAGCACTGGATGTTTAAGCAGCAAAAACGTTGATGAGTATTTTA
AAGTGCAATCTGTCTAACTTGTGTGCTTTCCAGCCCTGGGAAAAGGGATC
TATAAAAACAAACTCATCTAATGATTCAGCATCCTTAGCACAAAAGGCAG
GTGCCATGCTGTGTGTGGCTCAGCCTGGCCCTCAGGAGCAGCAGCGAGGC
TGTGAACGGTTCCCCAAAGCCAGACCCAGATCTCTATGTTTTTCATTCTT
GAATGCTTTTCTCCAGCTTTTTATAGCTTTTATCTCAAACACATTGTACT
TTAGAGTTATAAAGGACATGGAGATCAACTGGCTGAAGCCAGTAACTTTT
CAGTGGAGGATGCCATTTCCCTTTCCGCACCCAGGACACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTTCAGAAAATCAA
ATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCT
GAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAATATTCCTCCATTTTTGGTGGGATTGCAAGTT
TGTACAACCACTCTGGAAATCAGTCTGGCCATTCCTCAGAAAATAGGTCA
TCCAGAGTCTATGCTCAAAAGAACAACAAATAAACATCACAATTAAAGAC
ACTGTAAGTCAGATGGACTTCCTTAACAATCATTCACAGACTGACTATTC
CAGTATAGCAACACTCAGAATATACATTTTTTTTCAGACTATGGAACATT
TTCTAGTAACAGACCACATTTTAGCAAATCTAAAGACTTCAAGAAAACTG
AAATCCTTTCACGTATTCTGTCTCATCCTTATGGAATAAAACAGAAATAA
ACAGTAAAAGAAACCTCAGAAAAATGTGTATAATCTCATGGTGATTGAGC
AACACACTATTGAGTGAGTCACTAAAAACTATCCTGGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k03.b1 MSMg01no502_k03.b1 CHROMAT_FILE:
MSMg01no502_k03.b1 PHD_FILE: MSMg01no502_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:43 2005
         (449 letters)



>mm_chr19_36088631_36089481
          Length = 851

 Score =  806 bits (417), Expect = 0.0
 Identities = 442/451 (98%), Gaps = 2/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctttcatatgtaagatgtccagtttagccccttgtctcagggcctgaaaccaagca 60
           |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 201 tctgctttcatatgtaagatgtgcagtttagccccttgtcccagggtctgaaaccaagca 260

                                                                       
Query: 61  ggtgggttctagttcaataagatacacagtaagaagaactagaaatcttttccaagtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgggttctagttcaataagatacacagtaagaagaactagaaatcttttccaagtaca 320

                                                                       
Query: 121 aagtacaatttggggtgccaaatgctttgagttaacacaaagcgatacaaagacacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtacaatttggggtgccaaatgctttgagttaacacaaagcgatacaaagacacaaga 380

                                                                       
Query: 181 tacggtcacaactattggaactgtcaaggagagagaagaaaatcaaaccacagaaaagaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tacggtcacaactattggaactgtcaaggagagagaagaaaatcaagccacagaaaagaa 440

                                                                       
Query: 241 tgtatttgtgaaacagtccttcaaagaatttttttttttt--ctgagcactggatgttta 298
           ||||| || ||||||||||||||||| |||||||||||||  ||||||||||||||||||
Sbjct: 441 tgtatatgggaaacagtccttcaaaggattttttttttttttctgagcactggatgttta 500

                                                                       
Query: 299 agcagcaaaaacgttgatgagtattttaaagtgcaatctgtctaacttgtgtgctttcca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcagcaaaaacgttgatgagtattttaaagtgcaatctgtctaacttgtgtgctttcca 560

                                                                       
Query: 359 gccctgggaaaagggatctataaaaacaaactcatctaatgattcagcatccttagcaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccctgggaaaagggatctataaaaacaaactcatctaatgattcagcatccttagcaca 620

                                          
Query: 419 aaaggcaggtgccatgctgtgtgtggctcag 449
           |||||||||||||||||||||||||||||||
Sbjct: 621 aaaggcaggtgccatgctgtgtgtggctcag 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 851
Length adjustment: 10
Effective length of query: 439
Effective length of database: 841
Effective search space:   369199
Effective search space used:   369199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)