Query= MSMg01no503_b13.b1 MSMg01no503_b13.b1 CHROMAT_FILE:
MSMg01no503_b13.b1 PHD_FILE: MSMg01no503_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:17 2005
(631 letters)
>mm_chr19_10154391_10155426
Length = 1036
Score = 961 bits (497), Expect = 0.0
Identities = 541/559 (96%), Gaps = 7/559 (1%)
Strand = Plus / Plus
Query: 1 ggtctacagagctgggaagcctggcttt-----acttgttagaaactcagggctgtgtgg 55
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ggtctacagagctgggaagcctggctttcctttacttgttagaaactcagggctgtgtgg 260
Query: 56 tgagaaccaacagctttactacagacattaaggaagtctttgtcctcgctatcaaaagac 115
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 261 tgagaaccaacagctttactacaggcattaaggaagtctttgtccttgctatcaaaagac 320
Query: 116 ttctaagtaatcaatgctactatccaaacacttctaaccaaagctaacaagccatttccc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaagtaatcaatgctactatccaaacacttctaaccaaagctaacaagccatttccc 380
Query: 176 agaagagaaacagagacaggtgttgggcagaaaataaaatccctgcctagccaaagttca 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagagaaacagagacaggtgttgggcagaaaataaaatccctgcctagccaaagttca 440
Query: 236 gaactgtggcttatgtcctgtgcaccttggatcagacagggctgcaaaccagaatcaagg 295
|||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gaactgaggctgaggtcctgtgcaccttggatcagacagggctgcaaaccagaatcgagg 500
Query: 296 gggacagactctcttttgtctatgtcataagtcttggatgccaacacagctagggcactc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gggacagactctcttttgtctatgtcataagtcttggatgccaacacagctagggtactc 560
Query: 356 tttctatgaccctgttgactgagagtaagtttgtattctctcatatctgcttgttgaggg 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctatgaccctgttgattgagagtaagtttgtattctctcatatctgcttgttgaggg 620
Query: 416 ctctgctctgcccagcgctgtaattttccttcacgatactggcattgaacccaaggcctt 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 ctctgctctgcccagcgctgtaattttccttcacaatactggcattgaacccaaggcctt 680
Query: 476 gagcatgctgcgcaaggactttgccactgagctacat--acagcttgtcttgtgttcatc 533
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 gagcatgctgcgcaaggactttgccactgagctacatctacagcttgtcttgtgttcatc 740
Query: 534 ttcagtatattatctccat 552
|||| |||||||||||||
Sbjct: 741 ctcagcatattatctccat 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1036
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1026
Effective search space: 637146
Effective search space used: 637146
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_b13.g1 MSMg01no503_b13.g1 CHROMAT_FILE:
MSMg01no503_b13.g1 PHD_FILE: MSMg01no503_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:17 2005
(532 letters)
>mm_chr19_10323942_10324873
Length = 932
Score = 1013 bits (524), Expect = 0.0
Identities = 530/532 (99%)
Strand = Plus / Minus
Query: 1 ccaggtcgaataggaggtttcaaagcacacagagacccacttacaccgattttcccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccaggtcgaataggaggtttcaaagcacacagagacccacttacaccgattttcccattc 673
Query: 61 ccacttcaacccaacagatatatatacccaggtgtttacacaactgtgcatacatattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccacttcaacccaacagatatatatacccaggtgtttacacaactgtgcatacatattag 613
Query: 121 agtttatgacaagcttgactcgtaagcatgcagaatactccacacaggacacacactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agtttatgacaagcttgactcgtaagcatgcagaatactccacacaggacacacactgag 553
Query: 181 gcaggcagaacacacatggctgtgggcacatgtggacaggtaaacaaaatgcatgtttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcaggcagaacacacatggctgtgggcacatgtggacaggtaaacaaaatgcatgtttat 493
Query: 241 tcctgtgcccaacctacagcactctgctacatgtggtccagctgcacataggtaccaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcctgtgcccaacctacagcactctgctacatgtggtccagctgcacataggtaccaagg 433
Query: 301 cacacacatgcactcacagatggacacacatcatcacagctagagtggaggttcttccag 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 cacacacatgcactcacagatggacacacatcatcacagctaaagtggaggttcttccag 373
Query: 361 gggaaggttgtcctgcctagccaggaccttgactcccaggccctgcatccagctactgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggaaggttgtcctgcctagccaggaccttgactcccaggccctgcatccagctactgag 313
Query: 421 aagtgggcgggggcatggtatcactgctttgtaggggaccctcaaacttctccttgtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagtgggcgggggcatggtatcactgctttgtaggggaccctcaaacttctccttgtgtg 253
Query: 481 tttcctgtggtgactgcatgtctccatgaatagcccagtgtccgtccctgac 532
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 252 tttcctgtggtgactgcatgtctccatgaagagcccagtgtccgtccctgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
