BAC Information

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BAC

Clone NameMSMg01-503E24
Chromosome19 (Build37)
Map Location 58,871,534 - 58,872,057
singlet/doubletsinglet
Overlap geneHspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503E24.T7 (MSMg01no503_e24.b1)MSMg01-503E24.TJ (MSMg01no503_e24.g1)
ACCAG578458AG578459
length719470
length of high quality
(start - end)		533 (65 - 597)---
definitionCHROMAT_FILE: MSMg01no503_e24.b1 PHD_FILE: MSMg01no503_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:33 2005CHROMAT_FILE: MSMg01no503_e24.g1 PHD_FILE: MSMg01no503_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGATNNTNNNTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCATCCTGATTTAAAACACTGGAAGCAT
GCATAATGAATGGATGGACAGACGAATGAATGGACGGACAGACAGACGGA
TGGATGGGTGGATGGATGGACGGATGGATGGATGGACAGATACAGAATGA
GGGAAGGGACTTCAAATGCAAGTTGGATTTGTGAACCATCATCATAGCCA
ATATGCAGATTTTTAAAAAGCATTTTGAATTTCAACCTATTGTCTTCTTT
TCCACACCGCTTGCCGCAGAACTCCCTGCCAGAATGTGAAAAAAAAATGC
TATCAAACCACAGAACAAGCGAATGGGAACCCCAAACTGGACGGCAGGGT
CTCAAATCCAGACCTCAGGATGCCTGCTTTCTAGGACTCCTGCAAACCCT
GCTTCAGAAGCTCATGGGTGTTTCCAGCCACAGTCCTCAAATAGACTTTC
GATTTTGTTATAATGGATATAATTTTATGTACATAGAACACGAGAATCTT
GTATAGAATCTTTATTTCTACTTGTGCTTGTTTGAAAGGGAAAATACTCG
CAATTTTGGTTAATAACGCTGCTGCCTGTAAGCTCATTTCTTAACTGTCC
TCACTGGTTGCTTCATTTCTTAACTGTCCTCACTGGTTGCTGTCTGTGCT
GTTACCCCACAGTGGACGT

TTTGTGTTGGTGTGGGCGCGGCTCCTTAGGCCTTAAGTCCGATCTCGGCC
GCNTAGTCGCTCGTGCTCTGTATCGCCCTCCGTGTGCCGGTTGTGCCAGG
GCTGTTTTCGCCGGTCCTTGGTTAGGCCCCGCTTGCGGAAAGGGGNNNCC
CCCTTTTTGNNTGAAACCTCCCATTATCTTATGNGTTCCTGCGCTTAACG
GGGGGGGGTTTTTTTTTGGNNTTTTTNNNCCTNNNNTTTTATATTATTTT
TTTTTTAANTTTTNNTTTTNNNTTTTTTTTTTTTTTTTTTTTTATTTTTT
ATATNTTTTTTAATTTTTTANTTTAAAANAATTNTTTATTNNNATTTNTN
TTTTTTTTTTTNNNNTTTTTTNANNTTNTNTTTTTTCTTTNNNTTNNNTT
NTTTATTNTTTTTNNNTTNTTTTTTTTTTTTCCCCCCCCCCCTTCTTCCC
CTTTCCTGTGGGGTGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_e24.b1 MSMg01no503_e24.b1 CHROMAT_FILE:
MSMg01no503_e24.b1 PHD_FILE: MSMg01no503_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:33 2005
         (533 letters)



>mm_chr19_58871207_58872141
          Length = 935

 Score =  901 bits (466), Expect = 0.0
 Identities = 510/540 (94%), Gaps = 26/540 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcctgatttaaaacactggaagcatgcataatgaatggatggacagacgaat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 851 ggaattcatcctgatttaaaacactggaagcatgcataatgaatggatggacaggcgaat 792

                                                                       
Query: 64  gaatg--------gacggacagacagacggatggatgggtggatggatggacggatggat 115
           |||||        ||||||||||||||||||||||||||                |||||
Sbjct: 791 gaatggatggacagacggacagacagacggatggatggg----------------tggat 748

                                                                       
Query: 116 ggatggacagatacagaatgagggaagggacttcaaatgcaagttggatttgtgaaccat 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggatggacagatacagaatgagggaagggacttcaaatgcaagttggatttgtgaaccat 688

                                                                       
Query: 176 catcatagccaatatgcagatttttaaaaagcattttgaatttcaacctattgtcttctt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 catcatagccaatatgcagatttttaaaaagcattttgaatttcaacctattgtcttctt 628

                                                                       
Query: 236 ttccacaccgcttgccgcagaactccctgccagaatgtg--aaaaaaaaatgctatcaaa 293
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 627 ttccacaccgcttgccgcagaactccctgccagaatgtgaaaaaaaaaaatgctatcaaa 568

                                                                       
Query: 294 ccacagaacaagcgaatgggaaccccaaactggacggcagggtctcaaatccagacctca 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccacagaacaagcgaatgggaaccccaaactggacggcagggtctcaaatccagacctca 508

                                                                       
Query: 354 ggatgcctgctttctaggactcctgcaaaccctgcttcagaagctcatgggtgtttccag 413
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ggatgcctgctttctaggactcctgctaaccctgcttcagaagctcatgggtgtttccag 448

                                                                       
Query: 414 ccacagtcctcaaatagactttcgattttgttataatggatataattttatgtacataga 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccacagtcctcaaatagactttcgattttgttataatggatataattttatgtacataga 388

                                                                       
Query: 474 acacgagaatcttgtatagaatctttatttctacttgtgcttgtttgaaagggaaaatac 533
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acgcgagaatcttgtataaaatctttatttctacttgtgcttgtttgaaagggaaaatac 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space:   483775
Effective search space used:   483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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