BAC Information

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BAC

Clone NameMSMg01-503G14
Chromosome19 (Build37)
Map Location 34,118,656 - 34,119,158
singlet/doubletsinglet
Overlap geneLipk
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf
Downstream geneEG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G14.T7 (MSMg01no503_g14.b1)MSMg01-503G14.TJ (MSMg01no503_g14.g1)
ACCAG578534AG578535
length707708
length of high quality
(start - end)
551 (96 - 646)503 (86 - 588)
definitionCHROMAT_FILE: MSMg01no503_g14.b1 PHD_FILE: MSMg01no503_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:40 2005CHROMAT_FILE: MSMg01no503_g14.g1 PHD_FILE: MSMg01no503_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTTTTTTNNCCTTATAATTGCGGCCGTTAAANGAATCACTTTGTACAT
AAACATCGGCGGAATTCCNTATATCCCAAAAACAACAAAGAAAGNTGAAC
ATGCTCACCGCACCTTAAAGAATTGGCTTTTTAAGACAAAACAGGGGCAG
TTATATCCCCCAAGGTCACCAAAGGCTCATCTTGCCTTTACCTTATTTGT
TCTAAATATTTTGCAAACTGATATTAAGGGTCAGTCTGCAACAGATCACC
ACTGGCATCCAGTTACTTCTAGTTCTTATGCATTGGTAAAATGGAAGGAC
CCGCTGACTAACGAATAGAAGGGTTCTTATCTGGTTCTAATCTGGGGAAG
AGTCTCAGTTTGTGTTTTTTCATGAGATGAAGATAGAGCTCGGTGACTGC
CAGAGAGATTAATTCGTCAGATGAACGCAGACTCTGAATCTTCTTATAAG
TATCACCTTGAGGACTTAAATTCCTCTTTTGCTTAAAATTCAGCTTGGGG
ACTCAGGCTCCCAGGAAGGTGTTTTCCTGCTACTCTCTGAGCCAGCTCCC
CGACAGGAGGCCGGAGACTAGCCTTAGCTTTACAATTTGCAACTGAATAA
AGTACCTGGACTTCCCCAAAAGAAGATATGCTTTTCTATTTTCTCATTGT
CTAGATCTTGTGTTTTTCAAGCAGGTTAATCAAGATTCTCCAGCCAGACT
AGCAGGT
TTTTTTTTNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTACTCCAGTGAC
ACTGTAACTCTGCTAAGAACTTAGGCATTGAGAAGATGGCAAATCAAAAA
TAAATATTAAATTTCTGCTTTAAATGGTATCTGGTAACTTTTGCCAGGAC
TTCTTAGTTTATTTTTAAATTGACAGTGAGAAATCCTGAATTATTTAGAC
ATCACCCTTCCTTAGCAATATAGAATCCCTAGTGATTTATATCGGTAATT
AAATCAATATAATTTATGGTGTTATTTAGTGTAGTTTTAATTAAGGCCTT
CTAAATATGCAGAGTTCATCTTCTGTTTGAGTTTCCACCAACAGTTCCAA
GCAAGGGACCATATCAGAACTTCACTCACGATGGACGAGTGATTTTCCTT
CCATTTGTAAATACAAAGATGAACTTCATAATTCTGACCTCACTTTTATC
CAAGACTTCTAGCTCATAAGATGAGGCCAGCATCTACAATGCTCTTCCTA
AAGAAACCCTAAACTTGGTGGAACAAGAAAGGCAGACATTAACAGGGAAG
AACATCATAGCCTGCCATAAAGTGTGTTTGCTGCACCAAATCTGTGTAGA
TTACACTATAGCAGTTTTAGAGGACAGCCAGATTTTTCAAAACATCAAAA
ATATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g14.g1 MSMg01no503_g14.g1 CHROMAT_FILE:
MSMg01no503_g14.g1 PHD_FILE: MSMg01no503_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:41 2005
         (503 letters)



>mm_chr19_34118456_34119358
          Length = 903

 Score =  895 bits (463), Expect = 0.0
 Identities = 493/503 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattactccagtgacactgtaactctgctaagaacttaggcattgagaagatggcaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cattactccagtgacactgtaactctgctaagaacttaggcattgagaagatggcaaatc 644

                                                                       
Query: 61  aaaaataaatattaaatttctgctttaaatggtatctggtaacttttgccaggacttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaaaataaatattaaatttctgctttaaatggtatctggtaacttttgccaggacttctt 584

                                                                       
Query: 121 agtttatttttaaattgacagtgagaaatcctgaattatttagacatcacccttccttag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 583 agtttatttttaaattgacagtgagaaatcctaaattatttagacatcacccttcctgag 524

                                                                       
Query: 181 caatatagaatccctagtgatttatatcggtaattaaatcaatataatttatggtgttat 240
           ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 523 caatatagaatccctagtgatttatgtcagtaattaaatcaatatactttatggtgttat 464

                                                                       
Query: 241 ttagtgtagttttaattaaggccttctaaatatgcagagttcatcttctgtttgagtttc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taagtgtagttttaattaaggccttctaaatatgcagagttcatcttctgtttgagtttc 404

                                                                       
Query: 301 caccaacagttccaagcaagggaccatatcagaacttcactcacgatggacgagtgattt 360
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 403 caccaacagttccaagcaagggaccatatcggaacttcactcaccatggacgagtgattt 344

                                                                       
Query: 361 tccttccatttgtaaatacaaagatgaacttcataattctgacctcacttttatccaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tccttccatttgtaaatacaaagatgaacttcataattctgacctcacttttatccaaga 284

                                                                       
Query: 421 cttctagctcataagatgaggccagcatctacaatgctcttcctaaagaaaccctaaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttctagctcataagatgaggccagcatctacaatgctcttcctaaagaaaccctaaact 224

                                  
Query: 481 tggtggaacaagaaaggcagaca 503
           |||| ||| ||||||||||||||
Sbjct: 223 tggtagaataagaaaggcagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)