BAC Information

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BAC

Clone NameMSMg01-503J19
Chromosome19 (Build37)
Map Location 11,570,773 - 11,571,311
singlet/doubletsinglet
Overlap genenone
Upstream gene0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c
Downstream geneEG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J19.T7 (MSMg01no503_j19.b1)MSMg01-503J19.TJ (MSMg01no503_j19.g1)
ACCAG578688AG578689
length742736
length of high quality
(start - end)		588 (58 - 645)543 (86 - 628)
definitionCHROMAT_FILE: MSMg01no503_j19.b1 PHD_FILE: MSMg01no503_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:56 2005CHROMAT_FILE: MSMg01no503_j19.g1 PHD_FILE: MSMg01no503_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCCTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
GAGGATCCGCGGAATTCCATTAAAGTTTTGTGGCATTAGGGACATTGAGA
ACCACGACACTAGGCACATGGTTAGATCAGTGAAAGCCTTGCTCTTAGGA
GGGACTCAAGTAGTGTTATGTGACTCTGATTAGTTCTTACAAAGATAAAT
TGTGTTATCAAGAAAACTTTGAGCTGGGCGTGGTGACGAATGCCTTTAAT
CCCAGCACTTCGGAGGCAGAGGCAGGCGGATCTCTTGAGTTCGAGGCCAG
CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGGTATACAGAGAAACC
CCCGTCTCAAAAAACCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCT
TGGGTCTTGCTCACAGTTTCCATTTCGCCAGTCAACAGTAATCTCTCTCA
TTTCCAGTATTACCTATCTTACATTGTGACTTAGATAACCTTAGGTAGAG
TTGTCAATTTCTGTGGTCATGCCTTTTGTTATGCCACCAAATAATATGTT
AAATAACCCCCCCCCATTTTTTTAATAATCACCCAACATCAAAGATTGAT
TTTGTGTAAGAAATCTTAAGTTCATTATACTAACGAGATTATGTAAGAAA
TGCCTGTGGTTAAGTTTGTCTTAGAGAATAAGCTTTTTCTATGAAACTGG
ATGCTTCGTAGACCCGCAAAGCACTGTATTCATTGTTGCTGN

CCCTTTTTTTTCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGT
ACCCCATTTTTAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAG
TTCTTTGTATATATCGGATATTAGCCCTCTACTGGATGTAGGGTTGGTAA
AGATATTTTCCCAATACGTTGGTTGCTGTTTTGTTTTATTGACAGTGTCC
TTTACCTTATAGAAGCTTTGTAGTTTTATGAGGTCCCATATGTTTATACT
TGATCTTAGAGCATAAGCTATTTGTGTTCTGTTCAGGAAAATTTCCCCTG
TGTCCATGTGCTTGAGGCTCTTCTCCACTTTCTTTTCTATTAGTTTCAGT
GTATCTGGTTTGAGGTCCTTGATCCCCTTATACTTGAGCTTTTTACAAGG
AGATAAGAATGGATTAATTTGCATTCTTCTAAATGCTGACCTCCAGTTGA
ACCAACACCATTAGTGGCAATGCTGTCCTTTTTCCACTGGATGGTTTTAG
CTTTTTGTCAAAGATCAAGAGACCATAGTTGTGTGGGTTCATTCTGGGTC
TTCAATTCTATTCCATTGATCATCTAGCCTGTCACTGTACCAACAGCATG
CAGTTTTTGTTTGGTTGGTTATTTTTTATCACTATTGCTCCGTAGTACAG
CTTGAGGTCACAGATGGTAGGGATGGTGATTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j19.b1 MSMg01no503_j19.b1 CHROMAT_FILE:
MSMg01no503_j19.b1 PHD_FILE: MSMg01no503_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:56 2005
         (588 letters)



>mm_chr19_11570522_11571511
          Length = 990

 Score =  913 bits (472), Expect = 0.0
 Identities = 521/544 (95%), Gaps = 16/544 (2%)
 Strand = Plus / Plus

                                                                       
Query: 56  ggcacatggttagatcagtgaaagccttgctcttaggagggactcaagtagtgttatgtg 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcacatggttagatcagtgaaagccttgctcttaggagggactcaagtagtgttatgtg 311

                                                                       
Query: 116 actctgattagttcttacaaagataaattgtgttatcaagaaaactttgagctgggcgtg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 actctgattagttcttacaaagataaattgtgttatcaagaaaactttgagctgggcgtg 371

                                                                       
Query: 176 gtgacgaatgcctttaatcccagcacttcggaggcagaggcaggcggatctcttgagttc 235
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct: 372 gtgacgaatgcctttaatcccagcacttaggaggcagag-caggcggatctct-gagttc 429

                                                                       
Query: 236 gaggccagcctggtctacaaagtgagttccaggacagccaggggtatacagagaaacccc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaggccagcctggtctacaaagtgagttccaggacagccaggggtatacagagaaacccc 489

                                                                       
Query: 296 cgtctcaaaaaaccaagagagagagagagagagagagagagaga------accttgggtc 349
            |||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 490 tgtctcaaaaaaccaagagagagagagagagagagagagagagagagagaaccttgggtc 549

                                                                       
Query: 350 ttgctcacagtttccatttcgccagtcaacagtaatctctctcatttccagtattaccta 409
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 550 ttgctcacagtttccatttcgccaggcaacagtaacctctctcatttccagtattaccta 609

                                                                       
Query: 410 tcttacattgtgacttaga----taaccttaggtagagttgtcaatttctgtggtcatgc 465
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 610 tcttacattgtgacttagacagataaccttaggtagagttgtcaatttctgtggtcatgc 669

                                                                       
Query: 466 cttttgttatgccaccaaataatatgttaaataacccccccccatttttttaa-taatca 524
           ||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||
Sbjct: 670 cttttgttatgccaccaaataatatgttaaataaccccccg---tttttttaaataatca 726

                                                                       
Query: 525 cccaacatcaaagattgattttgtgtaagaaatcttaagttcattatactaacgagatta 584
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 727 cccaacatcaaagattgattttgtgtaagatatcttaagttcattatactaatgagatta 786

               
Query: 585 tgta 588
           ||||
Sbjct: 787 tgta 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space:   566440
Effective search space used:   566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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