BAC Information

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BAC

Clone NameMSMg01-504I07
Chromosome19 (Build37)
Map Location 3,734,521 - 3,734,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289
Downstream geneSuv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504I07.T7 (MSMg01no504_i07.b1)MSMg01-504I07.TJ (MSMg01no504_i07.g1)
ACCAG579378AG579379
length753757
length of high quality
(start - end)
699 (52 - 750)572 (83 - 654)
definitionCHROMAT_FILE: MSMg01no504_i07.b1 PHD_FILE: MSMg01no504_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:09 2005CHROMAT_FILE: MSMg01no504_i07.g1 PHD_FILE: MSMg01no504_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGATTTCCTTATACTTAAAATAAAATCTAGATGTGAAT
GGGTACCACTGACTACAATACACAAGTGAACCTAGCCCACCACTTATCCT
CAAAGCAAAGCCATTCAGGCACACAGCCACCTTTTCCTAGTCCACATTTT
GACTGTGGCTGCTTTCACACATAATAGCAAAGGAGCAGCAGAGACTAACA
TATTTGCCAACTGACCCTTTACAGAAAATGTTTACCTAACTCAATAGAAC
TAGAAAACCATGATGTAAAATCTGTATAGAAAACGAGTATAGCTGGGAAG
TGGTGGTGTATGCTTTTAATCCCAGCACTCAAGAAGAGATAGGTGGATTT
CTGGGTATAGACCACACTGGTCTACAGAGAATTCTAGGACAGCTAGGGCT
ACAAAAAGAAACCTTGTCCCAAACAAATAAGCAAACAAAAAAGAAAAATA
AACTTATCCACATCATGTTGAAAGACATACAGCTCAGCCAGGTGGTGGTA
ATGCACACCTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGCGGATCTCT
GAGTTCCAGGTCAGTCTGGTCTACAGAGTAAGTTCCTGGACAGATAGCTA
CACAGAGAACCCATGTTTCAAAAGGAAAAAAGGAAAGAATGAAAGAAAGG
AAGAAGGAAAGACAGACAGAACGACAGACAAGCAGCTCCAAGGAACATGG
GAG
NNNNCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTAGGTCCTCTGCAT
GAAAAGCAAGTGCTATTAACCACGGAGCCCTCTCTCTGGCTCCTTTATTC
TGATTTTTCAAATAGTGGAGGTGTGTTGGTGGGTGAAAGACCACACTTGC
ATGAAGACCAGGGAGGAAGAAATGGAAACACGATTGTAACACTCTGACAA
CAACCTTTGAAGGTAGACTCTGGTGGATTTAAAGGTGGATACTGGAAAGC
AAGCACTGAGATGAACCCTAAGAGTGTTATCTCATCACCTAACTATGGAG
ATGAAATGAATTCAGAAAAGTACTTGATGTAAAAGAATGGAGTAAAAAGG
GAACAAAGAATAAATGAGACAAATAAAGCACAAATGGTAACATGTGTAGG
GCTGGGGAGATGGCTCAGTGGGTAAAAGCACGTGTTGTATAAGTGTGAGG
ACCTGAGTTCAAGTCTCCAGGACCCAGGGAAAAAGCAGGGCATGGCCACA
TGCATGTCTATAACACAGTGCTGTGGAGATTAGACAAGAGGCTCCCTGAA
GCTTGCTGGCCTTCAGGTTAGCTCCGGGTTCAGTGAGAGACGCTGTCCCA
AGAGAATATAGAAAGACTGGTAGAGCANGACACCCAGTTCTTGCGTGAGC
TGTGGCTGTGCACCTGCACACACACCCCACTTTTACGAGACACACGTACA
CTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_i07.g1 MSMg01no504_i07.g1 CHROMAT_FILE:
MSMg01no504_i07.g1 PHD_FILE: MSMg01no504_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:09 2005
         (572 letters)



>mm_chr19_3734521_3735492
          Length = 972

 Score =  803 bits (415), Expect = 0.0
 Identities = 430/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttaggtcctctgcatgaaaagcaagtgctattaaccacggagccctctctctggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacttaggtcctctgcatgaaaagcaagtgctattaaccacggagccctctctctggctc 376

                                                                       
Query: 61  ctttattctgatttttcaaatagtggaggtgtgttggtgggtgaaagaccacacttgcat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctttattctggtttttcaaatagtggaggtgtgttggtgggtgaaagaccacacttgcat 316

                                                                       
Query: 121 gaagaccagggaggaagaaatggaaacacgattgtaacactctgacaacaacctttgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 315 gaagaccagggaggaagaaatggaaacacgattgtaacactctgacagcaacctttgaag 256

                                                                       
Query: 181 gtagactctggtggatttaaaggtggatactggaaagcaagcactgagatgaaccctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtagactctggtggatttaaaggtggatactggaaagcaagcactgagatgaaccctaag 196

                                                                       
Query: 241 agtgttatctcatcacctaactatggagatgaaatgaattcagaaaagtacttgatgtaa 300
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 195 agcgttatctcatcacctaactatggagatgaaatgaattctgaaaagtacttgatgtaa 136

                                                                       
Query: 301 aagaatggagtaaaaagggaacaaagaataaatgagacaaataaagcacaaatggtaaca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aaaaatggagtaaaaagggaacaaagaataaatgagacaaataaagcacaaatggtaaca 76

                                                                       
Query: 361 tgtgtagggctggggagatggctcagtgggtaaaagcacgtgttgtataagtgtgaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tgtgtagggctggggagatggctcagtgggtaaaagcacgtgttgtataagtgtgaggac 16

                          
Query: 421 ctgagttcaagtctc 435
           |||||||||||||||
Sbjct: 15  ctgagttcaagtctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)