BAC Information

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BAC

Clone NameMSMg01-504O02
Chromosome19 (Build37)
Map Location 22,477,697 - 22,478,200
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O02.T7 (MSMg01no504_o02.b1)MSMg01-504O02.TJ (MSMg01no504_o02.g1)
ACCAG579652AG579653
length1,726755
length of high quality
(start - end)
---496 (83 - 578)
definitionCHROMAT_FILE: MSMg01no504_o02.b1 PHD_FILE: MSMg01no504_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:38 2005CHROMAT_FILE: MSMg01no504_o02.g1 PHD_FILE: MSMg01no504_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTGAGTAGGTTGTGAGTGTNTGTAGGAATAGTGGAGAGNNATATATAT
GTATACAAGCGNNCGTGAGAGCAGTCGTCTCACTCTTCCACATAAGAATG
AGGTGTGTTTCCTGCACAGATGAGAAGANGTNCGATNACTATCTATGTGT
CTTAGCGNGGGAAGAAGTGTCGCGGCATATCACCACCAAAACCTCTATCG
TNTTATNTTAGTACGACCGCGCCATATCACATAACACACACACTAATTCT
CATATTCATCCACCCACTCCCCAGCATTTATCTTCTTTCTCGACGAGGAA
GTTCACGTATATTTCCACCCTGACGACCGCCNATCTACTCTATTCTAACG
ATAGCACGGCGCCAGCTGCGGTCGTTCGCTAATTGTACCTCGATGTTATA
TATGATCTATAAGAGCNACAGTAGAGAGCCATCTACGCGCGTCGTGGGCG
CGACCGTAGTTATACGTACCTCTCCAAAATCAATTCTCTCTTACATCTCA
CCATTATGAGTAAGATCTGATCANATAACTAGCNTGTGTACTGAGNAGTA
TCTACACGATAATATTCTATATTTACTAAATAATATATGGNTATAGTACT
GTCGCTCTCGAGCCTGTCGCTCATATATCATATCTTATGCTTGACGAATA
CATCCCGCACGTATCATATGGTATACCGCAAACTATATCTACATAATATT
ATCAATCGCACCTATATCAAACAGTTTCGTTCGTTATAACTAATGCGTGC
GGAATTCGATGCGCGTGATGATGCTGCGCTTATCGGACGAGGTATGTATA
GACGCTACATCGNCGAACAGACATTCGAGTAGGAAGAGCGACGAGGCATC
TGTAGACCGGAACACGGGATACGAGCCGTGCACCTCATGTGATGTGGCGA
CGGTTACCTGTATCGTTATGCTCCGTCCAGCATCACGCCAGTCGTCCTAG
TAGACGCAGGCAGNTACACTTGCGTTCTTTGTTACGCGTATATAAATCAC
CACCAAGATGTAATGGCTGCCGATAGGAAACGCGAGGCACTTGTGTCGAA
TTATCAGTAGCATCCTTACGTCGTCGGATNCACGGCGCTGGACGCGGATG
GTGCGTTATCAGAATCTAGCACGTATAATAGCGATAATGGAGTATAGATA
CGGTACACTCTGAGATCAGTGCGATNTGATATATAGCATGCGACGNAGGA
TGCGACACGTACTATGCGCGATTACTGATTGATACAAACCNACATATCAC
ATACGCACGAATGCGATGTTGCGCCGCTCGTGCGCGGNCTAGNGCGACAG
ATNACATGATTATACGCTGTCGTATCTCTCACGAGTCTACACGCGCGCAG
ATGTCAGCGATCACACATAANCAATCGACGTAGAGACTTGCGCGGGTGCG
TGTTTAGCGTGTGCTCGCGCGCGCGTAACTTATACACACAGTATACATAC
ATCTCAACTCGTAGTGCACTCTGCCGCATTAATGCGTCATACACATCGAC
GAGCATATATCTCAGCGATCGAGTGAGCGTGCTGCGACGTGTGTGNTGTA
CTCGCTCGCTTCGCGTCGCGCATCGCTATATAATCACGCGCGACTGTCAC
TCTNATCGTGAGCACGCACGATATGTGTGAGTGATCATCGATGACGCGCG
CGCCCATATACTATAGTAATCATCCACACTCGTCGCCTGTTGATATGATG
AGTCACAATGATAGCGACGTGTGCGN
TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAGAGTAATTTCAA
ATGGCTGAGCATCCAATTTGGAAAAGCTAGAGAAATATTTTAAATAAAAG
TATCTTCATACCTACTGGTCTTGCAAAAAGTCACATGAGGAAGACTTAAT
AAATAAATAAATAAATAAATAAATAAATAATTCAAATAATCATTTAAGTT
ATATGACATAATTTGCTTGCTTCAAATTTTGACAACTTGACCATCATGAG
TTCAATTTTGGAGATAACTCATTGCTTCTTTCTCTGTGTACAAAACAGTG
GGTTTCTGGAACAAGCTGAAGGTCAACGATGCAGCTACAGAATGAAAAAT
AATAATACAACTGGTTGACAGAGGCACTAACAGATGTTCACAGGCTATTA
GAACTGGTCTATCTGATACACACTGTATAACCATTTAAAGGGTTAGAAGA
AAAAAGGAAACTCAGAGAACTCACTGGTGAACTGACTGCTGGAAAACTGA
CTTTAAGTGCAGTGGCTGTCCAGCCAGTACGCTGTTATGATGAAAATCAT
TTAGGAAGCTGGCACTGAAGCTGCCTACATTCCTGCCTCCCCACTTGTTC
AGTGTCAGGACCTGTCCTGCTAGCCTTTGCTCTTAATACAGCAAATGGGT
CCAAAGGGAACCTCTGTCTCCTTCTTCTCTCACTTCTTTCACTCTTTCTC
CTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o02.g1 MSMg01no504_o02.g1 CHROMAT_FILE:
MSMg01no504_o02.g1 PHD_FILE: MSMg01no504_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:38 2005
         (496 letters)



>mm_chr19_22477505_22478401
          Length = 897

 Score =  901 bits (466), Expect = 0.0
 Identities = 491/504 (97%), Gaps = 9/504 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtagagtaatttcaaatggctgagcatccaatttggaaaagctagagaaatatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcagtagagtaatttcaaatggctgagcatccaatttggaaaagctagagaaatatttta 252

                                                                       
Query: 61  aataaaagtatcttcatacctactggtcttgcaaaaagtcacatgaggaagacttaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 253 aataaaagtatcttcatacctactggtcttgcaaaaagtcacatgaggaggacttaataa 312

                                                                       
Query: 121 ataaataaataaataaataaataaataa--------ttcaaataatcatttaagttatat 172
           ||||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 313 ataaataaataaataaataaataaataaataaatagttcaaataatcatttaagttatat 372

                                                                       
Query: 173 gacataatttgcttgcttcaaattttgacaacttgaccatcatgagttcaattttggaga 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gacataatttgcttgcttcaaattttgacaacttgaccatcatgagttcaattttggaga 432

                                                                       
Query: 233 taactcattgcttctttctctgtgtacaaaacagtgggtttctggaacaagctgaaggtc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taactcattgcttctttctctgtgtacaaaacagtgggtttctggaacaagctgaaggtc 492

                                                                       
Query: 293 aacgatgcagctacagaatgaaaaataataatacaactggttgacagaggcactaacaga 352
           ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 493 aacaatgcagctacagaatgaaaaataataatacaaccagttgacagaggcactaacaga 552

                                                                       
Query: 353 tgttcacaggctattagaactggtctatctgatacacactgtataaccatttaaagggtt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgttcacaggctattagaactggtctatctgatacacactgtataaccatttaaagggtt 612

                                                                       
Query: 413 agaagaaaaaa-ggaaactcagagaactcactggtgaactgactgctggaaaactgactt 471
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agaagaaaaaaaggaaactcagagaactcactggtgaactgactgctggaaaactgactt 672

                                   
Query: 472 taagtgcagtggctgtccagccag 495
           ||||||||||||||||||||||||
Sbjct: 673 taagtgcagtggctgtccagccag 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space:   431082
Effective search space used:   431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)