GAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCG
CGGAATTCTTCCTTTTTTCCCCTGAAAAGATTACCTAAAAAAAGTAAGTA
GAAGTTTTAAAGCAGATTGGCAGTTTTTGTGCAATATGTCTAGGTATGTA
TTTGGAGGCTAGAAAAATTTATGTTCCTTTTCAACTCAACAGGTTTTGGT
TCTGTGAAAGGCATCACAAATCAATACATTTCTTTCTTTCTTTCTTTCTT
TTTTTTTTTTAGTAGAATGGGGAACAATTGTTCTATATAAGTTATATAGT
CAATTCTGAATATATGCATCATGCAAATATGTAAGAGTATCCTTGATAAT
AGGCCTTCTATCTTTAAGTATGTGTGTGTTTGTGTGTGTATCTCTCTCTC
TCTCTCTCTCCCTCTCTCTCTCTCTCTGTATGAATGATTGAAACTAGAGG
GATAATGATAAGAACTTCAAAGTCTTTTGACCTTCTCAGGTAAGGAAAAG
AGAACACATAATGAATGTGTCCTAGAGATCTCTATATCAATAAAATAGTG
TCTGTAGTTGACAACCCTATATTAGATACAGATAGTCTATAACTCAGAAC
AATTCAACCTACAAATATCGAGCTTTATAATAATGCAAACATAGTACATA
TTCAGGGGAGTCTACGCTGTGGATGTTTGATTTGCTCTTTTCCTGGGTGA
CTAATAAGTCATCTGATACTCTTTGGCGGTGCTGGCCTGTGGCATCAAGT
CA

NNNCCAATGCAANGGNGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATG
GCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTTTTGGTGGGACTGGCAGCTTATACNACCACTCT
GGAAATCAGTCTGGCCATTCCTCAGAAAATGANGGGGNATANCNNNCNNN
NNNNNNNNGGGGGGGGGGGGGGGCGGGGGGGGTGGGCGGGGGCGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTTTNTTTNNNTTTTTTTTTT
TTTTGTTTG

Query= MSMg01no506_i24.b1 MSMg01no506_i24.b1 CHROMAT_FILE:
MSMg01no506_i24.b1 PHD_FILE: MSMg01no506_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
         (604 letters)



>mm_chr19_26535068_26536071
          Length = 1004

 Score = 1073 bits (555), Expect = 0.0
 Identities = 598/625 (95%), Gaps = 25/625 (4%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcttccttttttc----ccctgaaaagattacctaaaaaaagtaagtagaagttt 57
           |||||||||||   ||||    ||||||||||||||||||||||||||||||| ||||||
Sbjct: 765 ggaattcttcc---tttccaaaccctgaaaagattacctaaaaaaagtaagtaaaagttt 709

                                                                       
Query: 58  taaagcagattggcagtttttgtgcaatatgtctaggtatgtatttggaggctagaaaaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taaagcagattggcagtttttgtgcaatatgtctaggtatgtatttggaggctagaaaaa 649

                                                                       
Query: 118 tttatgttccttttcaactcaacaggttttggttctgtgaaaggcatcacaaatcaatac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttatgttccttttcaactcaacaggttttggttctgtgaaaggcatcacaaatcaatac 589

                                                                       
Query: 178 atttctttctttctttctttct---------------ttt-ttttttttagtagaatggg 221
           ||||||||||||||||||||||               ||| |||||||||||||||||||
Sbjct: 588 atttctttctttctttctttctttctttctttctttctttcttttttttagtagaatggg 529

                                                                       
Query: 222 gaacaattgttctatataagttatatagtcaattctgaatatatgcatcatgcaaatatg 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaacaattgttctatataagttatatagtcaattctgaatatatgcatcatgcaaatatg 469

                                                                       
Query: 282 taagagtatccttgataataggccttctatctttaagtatgtgtgtgtttgtgtgtgtat 341
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tacgagtatccttgataataggccttctatctttaagtatgtgtgtgtttgtgtgtgtat 409

                                                                       
Query: 342 ctctctctctctctctctc-c-ctctctctctctctctgtatgaatgattgaaactagag 399
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctctctctctctctctctctctctctctctctctctctgtatgaatgattgaaactagag 349

                                                                       
Query: 400 ggataatgataagaacttcaaagtcttttgaccttctcaggtaaggaaaagagaacacat 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggataatgataagaacttcaaagtcttttgaccttctcaggtaaggaaaagagaacacat 289

                                                                       
Query: 460 aatgaatgtgtcctagagatctctatatcaataaaatagtgtctgtagttgacaacccta 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aatgaatgtgtcctagagatctctatatcaataaaatagtgtctgtagttgacaacccta 229

                                                                       
Query: 520 tattagatacagatagtctataactcagaacaattcaacctacaaatatcgagctttata 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tattagatacagatagtctataactcagaacaattcaacctacaaatatcgagctttata 169

                                    
Query: 580 ataatgcaaacatagtacatattca 604
           |||||||||||||||||||||||||
Sbjct: 168 ataatgcaaacatagtacatattca 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)