Query= MSMg01no506_k12.b1 MSMg01no506_k12.b1 CHROMAT_FILE:
MSMg01no506_k12.b1 PHD_FILE: MSMg01no506_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:56 2005
(415 letters)
>mm_chr19_36165775_36166589
Length = 815
Score = 731 bits (378), Expect = 0.0
Identities = 408/422 (96%), Gaps = 8/422 (1%)
Strand = Plus / Plus
Query: 1 ctagctctaatctattggatgaatcactagaaatatagcctcaccagctcc-------at 53
|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct: 193 ctagctctaatctattggatgaatcactggaaatatagcctcgccagctccgtttgtgat 252
Query: 54 -gtttttagatgacttctgtgcacacatgcatttgagaggtactgtttatgggcgtctct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 253 agtttttagatgacttctgtgcacacatgcatttgagaggtactgtttatgggcatctct 312
Query: 113 gccttggcaagcctgacttttccttgtgaggattgataaatgctgacaccaatgaaagat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccttggcaagcctgacttttccttgtgaggattgataaatgctgacaccaatgaaagat 372
Query: 173 acccagggtgaagggtgacagccctactaccctcctgggccctgtgtgccataacaacaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acccagggtgaagggtgacagccctactaccctcctgggccctgtgtgccataacaacaa 432
Query: 233 aatatacatatgcttggatattttcatggtgacaaacttttcttaaaccatcgtagattt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatatacatatgcttggatattttcatggtgacaaacttttcttaaaccatcgtagattt 492
Query: 293 ttctgttcctctccctaaaaaggttaaagatggccaagtaaattcatatataatctacca 352
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 ctctgttcctctccccaaaaaggttaatgatggccaagtaaattcatatataatctacca 552
Query: 353 atttcctgagaaaactgagatacttagctctaaaactattttagacatagttcaactgtt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atttcctgagaaaactgagatacttagctctaaaactattttagacatagttcaactgtt 612
Query: 413 tt 414
||
Sbjct: 613 tt 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_k12.g1 MSMg01no506_k12.g1 CHROMAT_FILE:
MSMg01no506_k12.g1 PHD_FILE: MSMg01no506_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:56 2005
(557 letters)
>mm_chr19_36330174_36331132
Length = 959
Score = 913 bits (472), Expect = 0.0
Identities = 538/564 (95%), Gaps = 12/564 (2%)
Strand = Plus / Minus
Query: 1 agccctaaaaa-atacataggcacaacatgaaagagagtcagaaggctgcatttatacat 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agccctaaaaatatacataggcacaacatgaaagagagtcagaaggctgcatttatacat 700
Query: 60 ttatttgcatatatacatgtaacaatagtaactaaaggaaaataggccgtgaatttgaga 119
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttatttgcatatgtatatgtaacaatagtaactaaaggaaaataggccgtgaatttgaga 640
Query: 120 ggggatgagtgtgttgggcacacaggacggtttggagggggaggggtaatattgttaaag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 639 ggggatgagtgtgttgggcacacaggacggtttggagggggaggggtaatatagttaaag 580
Query: 180 gaaaaggtaagagtgattcaacgtggccatattg-ggaagagaaacaaagagatgcagtg 238
||||||||||||||||||||| | ||||| || | ||||||||||||||||||||| |||
Sbjct: 579 gaaaaggtaagagtgattcaaggaggccacat-gaggaagagaaacaaagagatgcggtg 521
Query: 239 tgaccctgtttt----actgtcctcgggatcctgacatgggtgtgaagtctagaccgaag 294
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgaccctg----cgggactgtcctcgggatcctgacatgggtgtgaagtctagaccgaag 465
Query: 295 gcaaggtgtgcagagctaagcagtaatctggtcaaggtgtggctctgatcacgtctaggc 354
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 464 gcaaggtgtgcagagctaagcagtaatctggtcaaggtgtggctctggtcatgtctaggc 405
Query: 355 ttcggtcttctctgaagggtagcctgaca-atgacagagactgtcagaactgtgtggaac 413
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 ttcggtcttctctgcagggtagcctgacagatgacagagactgtcagaactgtgtggaac 345
Query: 414 ctcgcaccagtgggcatgttccctctttgactggcactaggctacagcctttcttctggt 473
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 344 ctcgcaccagtgggcatgttccctctttggctggcactaggctacagcctttcttctggt 285
Query: 474 atgcagtgcctgagggaaacttcggtttcttcagtacccttgtttccacagtcttggaac 533
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 atgcagtgcctgagggagacttcggtttcttcagtacccttgtttccacagtcctggaac 225
Query: 534 tggaaagagaggatagtatcttct 557
||||||||||||| ||||||||||
Sbjct: 224 tggaaagagaggaaagtatcttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 959
Length adjustment: 10
Effective length of query: 547
Effective length of database: 949
Effective search space: 519103
Effective search space used: 519103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
