BAC Information

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BAC

Clone NameMSMg01-507B07
Chromosome19 (Build37)
Map Location 34,495,483 - 34,496,035
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas
Downstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507B07.T7 (MSMg01no507_b07.b1)MSMg01-507B07.TJ (MSMg01no507_b07.g1)
ACCAG581317AG581318
length1,039777
length of high quality
(start - end)
---638 (73 - 710)
definitionCHROMAT_FILE: MSMg01no507_b07.b1 PHD_FILE: MSMg01no507_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:29 2005CHROMAT_FILE: MSMg01no507_b07.g1 PHD_FILE: MSMg01no507_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTTCGTCTCTCTTCCCTTTTCTCCACCTTCTCCAAATACGTGCA
ACTCTCATACATATCTTCCCCACACGCCACCTTCTTATCCTTTACCCTTA
TACTCCTCTTTCCTTCCTCTTCTCCACTTCGGTAAATCACCTACTTCCAC
TTACCTTCCCCCACTGCACCTCGTCAGAGGTCTGCCTCTCTCGCCGCCCG
CACCTCGCACCACCTCAAACCGCGAAACCTTACCATGAAATATATCAATA
TATATAATCACACGCCGTCTCCTTCAAACATTTAACTTCGTTCTCCTTCT
GTGACCTACCTCGCTGCTCACAGATAGATCGCCCACTTCCACTTAAATCT
ATAGTGATTATCTCGCCAATCTTCTATAACCGTCCCCCACCTCACCTCTC
CCCCAATAACTCTAGTTCCTAACTCGCGCCTCTTCTCCTGACATTTGCTT
CTATCGTCTCTCTTCTTGCTCGTTCCTCNTGCTGTGCGCTGTCCTCTCTA
GTTTCTATTCCTCACCCTTTATTCTCTCGAATTTCTTACGCATGCTCTGT
CTCACTGCACTACAAACATATAATCGTTTACATGATATTAATTCGAGTAC
TTCGCCGCCGTCCTGGTGTGCATACCTTTCATTGNCTTCTATCTTCTCAC
GCTCTCTTATAGCTCCTCACTTTTGTCGTTTTCGTAATCCCGCTGCGTCG
TTCGCCGCTCGATTATTAATTCACCACCTCCATACACTTTCAATATGTAC
CAACTTATATGGTGCTGTGGCGCTACATTATTCCTATCACCATATCCTCA
CCATCTTTATCTCCCCCACCCTATAGTATACCTCTGTACACCACTATTAT
TTTACGGATATACAGACACCTGCGGACTTGTGTGTCTCGCTCACTCTTAC
ACAGTGCTTTCATTCTCGAGAATCATTTGCACTGTATCATAACGCATACT
ATTACATTCTCCACGAACACTATCTATCAGGCGATATCGCGTACCACATC
TCAATTCACACACAATATGTAATCCTCGCGAGCACACTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAGTGTTCTTTGAGCCATAGTTGAAA
GGCAATGAGGACATTCTGTGTAGCTGGGACTCTAGAGGCACAAAAACAAG
TGAGAGACACGGTGGTTCTGTGAGAGACTGGCTATGGGGCTGGGCAGGGG
CATCGTGAATAACAAGAACAAAGCAGATGGGAGAAGTTGAGGAGAGGAAC
CGGACAGGAGTGGACCCTTCCTGTCTGGCAGCTGGCTGGGACTTTTAGCC
TGATGACACATTTACTAGACTGGATGATTTGATTAGAGGCAAATTTTGTG
GGAGAGGAGGTGGGAGACAGAGAGAAGCGAGTGGTGTTATTTGGTCAAGT
TATTTGTTATTTTGTGAAGGAGTGTGAACAGGGGCCTCTTTGGAATTAGG
CTTGAGCCTGAAAGTCTATGGCACCACTTACTAAATGACTAATTGTCTCA
GAGCCTGAATTTCCTCATCTCTGGGATGGCATCACTTTCACTCAATTGAC
AGAGTCATTGGAAAGCCTGGAGCTGGTGTGTGCTAAGCTGTTCCAACAGC
ATGAGGCACACTAAAAGTCTGCAGAGTCTAGTTCTTGCTCCTTCCCCCCA
GAGCACCAACCACTGTGCTTCACAGCTGAGACCAGCCAGCAATGACTCCT
ATCTATAAAATCTGTTTTGCCTGTTGTCACAGACGAGTTTCACACCAACT
TATGAACCTTNCCAGAGCTCTTTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_b07.g1 MSMg01no507_b07.g1 CHROMAT_FILE:
MSMg01no507_b07.g1 PHD_FILE: MSMg01no507_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:29 2005
         (638 letters)



>mm_chr19_34495483_34496520
          Length = 1038

 Score = 1062 bits (549), Expect = 0.0
 Identities = 552/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagtgttctttgagccatagttgaaaggcaatgaggacattctgtgtagctgggactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 actagtgttctttgagccatagttgaaaggcaatgaggacattctgtgtagctgggactc 494

                                                                       
Query: 61  tagaggcacaaaaacaagtgagagacacggtggttctgtgagagactggctatggggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tagaggcacaaaaacaagtgagagacacggtggttctgtgagagactggctatggggctg 434

                                                                       
Query: 121 ggcaggggcatcgtgaataacaagaacaaagcagatgggagaagttgaggagaggaaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggcaggggcatcgtgaataacaagaacaaagcagatgggagaagttgaggagaggaaccg 374

                                                                       
Query: 181 gacaggagtggacccttcctgtctggcagctggctgggacttttagcctgatgacacatt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 gacaggagtggacccttcctgtctggcagctggctgggactttttgcctgatgacacatt 314

                                                                       
Query: 241 tactagactggatgatttgattagaggcaaattttgtgggagaggaggtgggagacagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tactagactggatgatttgattagaggcaaattttgtgggagaggaggtgggagacagag 254

                                                                       
Query: 301 agaagcgagtggtgttatttggtcaagttatttgttattttgtgaaggagtgtgaacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agaagcgagtggtgttatttggtcaagttatttgttattttgtgaaggagtgtgaacagg 194

                                                                       
Query: 361 ggcctctttggaattaggcttgagcctgaaagtctatggcaccacttactaaatgactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggcctctttggaattaggcttgagcctgaaagtctatggcaccacttactaaatgactaa 134

                                                                       
Query: 421 ttgtctcagagcctgaatttcctcatctctgggatggcatcactttcactcaattgacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttgtctcagagcctgaatttcctcatctctgggatggcatcactttcactcaattgacag 74

                                                                       
Query: 481 agtcattggaaagcctggagctggtgtgtgctaagctgttccaacagcatgaggcacact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  agtcattggaaagcctggagctggtgtgtgctaagctgttccaacagcatgaggcacact 14

                        
Query: 541 aaaagtctgcaga 553
           |||||||||||||
Sbjct: 13  aaaagtctgcaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)