NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCCTTTGCCTTTCCATTTTATTTCTTTACCCATCAGAGATCCC
TGAATGAGTCTGGAAGTTCCATATTAGGAGTCTCTCCTATGTATAGGGTG
TTTTCTACCCTGTCTCCATGTTTCCCAAAATAAGGACTGTGAGACTCAAA
GATTTGGCTGATCCCTGACTAGCTCATAAATTTATCATTCTGTTTTTCTA
TTCTAAGTTCTTCTTAGAACTGGCTGGTTACTTCTGCTCAGCTATTGTGC
ATCTGTCCTTCATCATGTCCTAGGGTACGTTCTCCCCTGCCTGGCTCTAT
CCCAGAATCATTTCCAACTGGATATCCCACTCTACACTCCAATCCAATTT
ACCAACACACTTTCTTAAGAATCTCAGCAGGACATAGTGGCTCATGCTTG
TAACCCCAGGACTGGGAAGGCTATAGCAGGGGACATCAGCAACTTTGAGT
CATAGTCTGGCATACACAGTGAATTCTAGCCCAGACTACACTATGAAAGT
GAAACCTTATCTCAAACCCACAAAATGGAATGGATTTTTGCCAGGAGTGG
TGGAGCATACCTTTACTCTTCTTAGGCAGAAGGCAGAAACTGGAGGTTTT
CTGTGAGTTTGGGGCTAGCCAGGGCTACATAGTAAGTCCCTATCTTTGNC
AGTCTGCCAGTAGAGACCAACTGCTTTTCATATTAGAAAAGATCCAACAC
GAN

NTTCGCATGTATGGAGGCCGGGGCGCCGGCTCCAAATTAGGGAACATAAA
GGTCCCGGAATCCGCAGCAAATTGGACTGACATGGGGACCCAGGGAGAGT
AGGGGAAGGAGTAAGGAGTGAAGGGGTTGCACCCTAGAAGAACACGCTCA
TCAACAGATTCTCAAGCTCTCAGGGACTAACCCCAGAGACCTGAAGGGAC
CCATTGCTCCAGCTGCACATGTAGCAAGAGGACTTACTGGATCATGGAGG
ATAACTTGGCCGGGAAATTTTTCCCCCCAAGGGAAAGTTGGGCCTTGGCC
GTTTTTTGGGGGAAGGGGGGGAAACCCCCCCCCAAAAAGGGGGGAAAGGG
GAAAAAAGGGGGGTTTNNNNNNNNNNNNNAGNNNNNTGGGGGGNNNGGGA
GGGGGAANTGGGNNNNNNNNNNNNNNNNGNAGGAGGTGGGTNNCAGGGAT
GAGATAGTACTGGTGNTTGTGATGCTATCTCTTGTTGGGGACNCCCATGA
TTATAGTTACCCCNCCGCCCGTTCTTTTTACCCCCCCCCGGCCAAATTTT
TTTTTTTTTTTTNCTCCCTTCCTTTCCCCCCCCACTCCCCGTGCTTTTTC
CG

Query= MSMg01no508_b12.b1 MSMg01no508_b12.b1 CHROMAT_FILE:
MSMg01no508_b12.b1 PHD_FILE: MSMg01no508_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:52 2005
         (582 letters)



>mm_chr19_34965633_34966615
          Length = 983

 Score = 1046 bits (541), Expect = 0.0
 Identities = 571/581 (98%), Gaps = 1/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcctttgcctttcca-ttttatttctttacccatcagagatccctgaatgagtct 61
           |||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctttgccctacaaattttatttctttacccatcagagatccctgaatgagtct 262

                                                                       
Query: 62  ggaagttccatattaggagtctctcctatgtatagggtgttttctaccctgtctccatgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 ggaagttccatattaggagtctctcctatgtatagggtgttttctaccctgtctctatgt 322

                                                                       
Query: 122 ttcccaaaataaggactgtgagactcaaagatttggctgatccctgactagctcataaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcccaaaataaggactgtgagactcaaagatttggctgatccctgactagctcataaat 382

                                                                       
Query: 182 ttatcattctgtttttctattctaagttcttcttagaactggctggttacttctgctcag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatcattctgtttttctattctaagttcttcttagaactggctggttacttctgctcag 442

                                                                       
Query: 242 ctattgtgcatctgtccttcatcatgtcctagggtacgttctcccctgcctggctctatc 301
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ctatcgtgcatctgtccttcatcatgtcctagggcacgttctcccctgcctggctctatc 502

                                                                       
Query: 302 ccagaatcatttccaactggatatcccactctacactccaatccaatttaccaacacact 361
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 ccagaatcatttccaactggatatcccactctacactccaatcccatttaccaacacact 562

                                                                       
Query: 362 ttcttaagaatctcagcaggacatagtggctcatgcttgtaaccccaggactgggaaggc 421
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 563 ttcttaagaatctcagcaggacatagtggttcatgcttgtaaccccaggactgggaaggc 622

                                                                       
Query: 422 tatagcaggggacatcagcaactttgagtcatagtctggcatacacagtgaattctagcc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatagcaggggacatcagcaactttgagtcatagtctggcatacacagtgaattctagcc 682

                                                                       
Query: 482 cagactacactatgaaagtgaaaccttatctcaaacccacaaaatggaatggatttttgc 541
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 cagactacactatgaaagtgaaaccttatctcaaatccacaaaatggaatggatttttgc 742

                                                    
Query: 542 caggagtggtggagcatacctttactcttcttaggcagaag 582
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caggagtggtggagcatacctttactcttcttaggcagaag 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)