BAC Information

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BAC

Clone NameMSMg01-508H12
Chromosome19 (Build37)
Map Location 59,243,458 - 59,243,694
singlet/doubletsinglet
Overlap geneVax1
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
Downstream geneLOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508H12.T7 (MSMg01no508_h12.b1)MSMg01-508H12.TJ (MSMg01no508_h12.g1)
ACCAG582375AG582376
length964745
length of high quality
(start - end)
---239 (75 - 313)
definitionCHROMAT_FILE: MSMg01no508_h12.b1 PHD_FILE: MSMg01no508_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:23 2005CHROMAT_FILE: MSMg01no508_h12.g1 PHD_FILE: MSMg01no508_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTCTGTGCTGTGCGGCTGGGTTCCCGCGTTGTCTTTCTCTCCCTCC
CATGATGTTCTTGAATGCTTTATATCTTAACAGTCTCCCAACNTCCCTGT
CCCCCTCACTCGTTTGGTTATCACGTAAGTTGATTCGTCATAGACCCCGA
GCACGCGGCCCGGCGTGCCCCTTATCGGCAGCCCGGCGCCGGTTGGATCT
ATTGCGTATCCACGACTCTCCATACTTATTTTATCTCCTCTCTTTTCTCA
TCACACTATTGTGGGTGTTGTCCTCCGTTGCGAGCGTGGCCACGTGACCC
TCTACATCTCATACCTCATTCTAAATCTTATTCATCACCCAGGAAGTGGT
TATAAATGGAGACATATCCCTAATCCACTTTCGTTATCGGTGTCCCCTAT
CCCCCGGTTCTCCTGCCTTCGTCCTGCGGTCTCGGTGCTTTTTTACTCCG
CTGAGTCCCTCTATATTGTATGAATATAACAGATTTACGCGGAGTGACAT
CACAATCCTCTACGGAGAATCGTAGGCTTGCTGTTTGTTTACTGCTCTCT
GTACCACCGGAGTTCATGATTATTTTTTTTAGTCACCGGCCTATTGTAAT
AAGACAGCACAGTCGCATCCGCTCATAATTACTATTCACTCCCGCTCTTC
CGCCTCGTCGTCCATCTCTACGATTTCGAGTCGAACGCGCTGTTGATTGC
ACATATCGTGTAGTATATATTAATATTTGCCCCCTCGTATGTGCCTCACG
ATTCAATGTTATATATTTATGATTTTTTTGGACATTATTATCGAGCTATG
TAGGCGCCCTATGCCTTCAATGATTATATAATCATAACGAGTCTGATGAC
CTGTCACTCGATTGCTTCGCACCATCCTGGTATAACTGTAATATGATGAA
CCTGTAGTGCCGTGCCTTCCGTCTTCACATAGGTATGTGGTGATACTTTC
TATCTATTTCAACG
NNAACGATGAAGTGGGAGGCCTGGCGGCGCCTGGTCAAAAACGTAGGTGA
ACTATAGAAGTACAAAATAATTCCATTAGGTAAATGCTCCTTCCGGCCTA
GGGGGCCTCTGGTGTGTGATCCGAGTCCCCAGTAGCCCAAAGGGGCTCTT
ACTGGTAACCCCACCTCCCAGTATGGTCCCAGATTGCAGGGCAGCCTGCA
CTCCTGTGGTCCCCACCCTTACCCCGGGTCTCCGGCCCGCTTCAGTCCTT
TTAGCGGAAGGAGGAGGGACGGAATGTCGGCTTGCGGGGCCTGGCTAACA
GCTAGCGGGGGCGGTTCCTGNNTAAGCTGGGCCTCGGCGCCACCAATGCC
CGGGAGGAGCGCACACCGCTCCTTGAGCGAGGACGAGCGAAGCAAAGAGG
CGGCATTCGCACACCCGCGACTCAGGTCGGCGATCTCTCTAGGCCACTGC
AGCCAGGCCAGGAGCGCAGCGCCAGGGCCCTCAGCCCTACCAGCTAACTG
GCTGGCGCTGGCCAGCGGCGGGAGGCTACGGGTCCTAGCCCACTGCTCCA
TCGGGTGCGCTCTGCCCTCCATGGCACACACGCCTGCAGGCCGGAGGACG
CGCGCACGTTCCCCTGGAGGAGCTGGGTCCGAGCCCCAGCTTGGTGGCCG
GTCCACAGTCTCGGTCTGGATTCTTTCCCGCAACCGTGCTGCGGGGCCCC
TCCGGACTGCTAGGGCCCAGAAAGAGCGCTTTGAGAGGAGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_h12.g1 MSMg01no508_h12.g1 CHROMAT_FILE:
MSMg01no508_h12.g1 PHD_FILE: MSMg01no508_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:23 2005
         (239 letters)



>mm_chr19_59243256_59243894
          Length = 639

 Score =  412 bits (213), Expect = e-119
 Identities = 232/241 (96%), Gaps = 8/241 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   taggtaaatgctccttccggcctagggggcctctggtgtgtgatccgagtccccagtagc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taggtaaatgctccttccggcctagggggcctctggtgtgtgatccgagtccccagtagc 262

                                                                       
Query: 63  ccaaaggggctcttactggtaaccccacctcccagtatggtcccagattgcagggcagcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaaaggggctcttactggtaaccccacctcccagtatggtcccagattgcagggcagcc 322

                                                                       
Query: 123 tgcactcctgtggtccccacccttaccccgggtctccggcccgcttcagtccttttag-c 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    || |
Sbjct: 323 tgcactcctgtggtccccacccttaccccgggtctccggcccgcttcagtcc----agac 378

                                                                       
Query: 182 -g--gaaggaggagggacggaatgtcggcttgcggggcctggctaacagctagcgggggc 238
            |  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcagaaggaggagggactgaatgtcggcttgcggggcctggctaacagctagcgggggc 438

            
Query: 239 g 239
           |
Sbjct: 439 g 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)