Query= MSMg01no508_j20.b1 MSMg01no508_j20.b1 CHROMAT_FILE:
MSMg01no508_j20.b1 PHD_FILE: MSMg01no508_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:34 2005
(569 letters)
>mm_chr19_11090774_11091742
Length = 969
Score = 688 bits (356), Expect = 0.0
Identities = 356/356 (100%)
Strand = Plus / Minus
Query: 4 ggaattccttggctgtcaggtgtcagaccaatgacaggcaagtctcttgttcatttttta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggaattccttggctgtcaggtgtcagaccaatgacaggcaagtctcttgttcatttttta 297
Query: 64 atgggtgctgaggattgaatccaggccctctcgtgcactgagctctggcaccacacagca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgggtgctgaggattgaatccaggccctctcgtgcactgagctctggcaccacacagca 237
Query: 124 tttccgggcctttttagttttatgtcattttaattttgagacaacattttattaagtggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttccgggcctttttagttttatgtcattttaattttgagacaacattttattaagtggt 177
Query: 184 ccaagtcatcttgaaattgctctgtaatataaataagtcttgaagttgcaatctcctacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ccaagtcatcttgaaattgctctgtaatataaataagtcttgaagttgcaatctcctacc 117
Query: 244 tcagactcctaaggagcttgtatcatgagcctgtgcagccccaaattgacaagtgttttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcagactcctaaggagcttgtatcatgagcctgtgcagccccaaattgacaagtgttttg 57
Query: 304 ttgctgttgttttctcggtttagcttcaagacagggcctcacatatcccaggttgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgctgttgttttctcggtttagcttcaagacagggcctcacatatcccaggttgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_j20.g1 MSMg01no508_j20.g1 CHROMAT_FILE:
MSMg01no508_j20.g1 PHD_FILE: MSMg01no508_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:34 2005
(541 letters)
>mm_chr19_10919564_10920505
Length = 942
Score = 948 bits (490), Expect = 0.0
Identities = 527/542 (97%), Gaps = 6/542 (1%)
Strand = Plus / Plus
Query: 1 caggacagtcagggctgtacagagaaaccctgtctcgaagaaaccaaataaataaataga 60
|||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 caggacagccagggctgcacagagaaactgtgtctcgaagaaaccaaataaataaataga 265
Query: 61 taaacaaacaaataaaaccaaaaacaaacaaacaaacaaacaaaaacaggggctagtagg 120
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 taaataaacaaataaaaccaaaa-----caaacaaacaaacaaaaacaggggctagtagg 320
Query: 121 caagtaattgacctactctataaaactgaatacaaagaaaaatgtattgatattgaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtaattgacctactctataaaactgaatacaaagaaaaatgtattgatattgaatgt 380
Query: 181 gatacccgggagagcaggctgggaagtagctgttatgctgcctacagtatagggtaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 381 gatacccgggagagcaggctgggaagtagctgttatgctgcctacagtacagggtaataa 440
Query: 241 tgtgtgagtcttcatttggttagaatgagtctctttgtgggcattccaggcatgtgattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgagtcttcatttggttagaatgagtctctttgtgggcattccaggcatgtgattt 500
Query: 301 tgggccccatgaaggaagacagctcagatggggagtgcacagttctgagaggttagcacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggccccatgaaggaagacagctcagatggggagtgcacagttctgagaggttagcacg 560
Query: 361 agctgctatatatagaattttctgttgggtaatattaactatgcaaatgagagttatgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctgctatatatagaattttctgttgggtaatattaactatgcaaatgagagttatgca 620
Query: 421 aatctaggtagttcctattgatcaaaattcagccctggtagggttacagggcat-gtctg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 621 aatctaggtagttcctattgatcaaaattcagccctggtagggttacagggcgttgtctg 680
Query: 480 ccactagcagttgggattcctagaccacacttgtgaatattttctaaaggctaccatctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 ccactagcagttgggattcctagaccacacttgtgaatattttctaaaggctaccatttc 740
Query: 540 tc 541
||
Sbjct: 741 tc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
