BAC Information

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BAC

Clone NameMSMg01-509E09
Chromosome19 (Build37)
Map Location 12,977,687 - 12,978,247
singlet/doubletsinglet
Overlap genenone
Upstream geneAV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447
Downstream geneEG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509E09.T7 (MSMg01no509_e09.b1)MSMg01-509E09.TJ (MSMg01no509_e09.g1)
ACCAG582990AG582991
length742757
length of high quality
(start - end)
560 (73 - 632)619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no509_e09.b1 PHD_FILE: MSMg01no509_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:27 2005CHROMAT_FILE: MSMg01no509_e09.g1 PHD_FILE: MSMg01no509_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAATCAAAAATTTGCGGTCGCNAAAAGAANCACAATCAAAACAGGATCCG
CGGAATTCATAGTCCTCCATACAGCCCTTTTTTTTCTATATGTGCTAAAT
TTCTTACTTTAGTGTTTATGCAGTATAGATACTTATACATATCTATAAAA
GAAAGAACACTCACCATATAGTAGTCAGTCCAAAATGATGAAACCATCTA
TGGAATGTTGGATAGGTACCTTCTGAGGAGCACTTAGCGTCAAAAATTCC
AAACAGTGTGGGAGAAGCTAAATAAGAAAATCATATTTACATAAACCAAG
GTCTACAGTTATTTATTANTTTTCTATACCTTTGTAAGAGTTACTTACTT
CTTTCATATTTGTAAAATTAACAAAGTAAAAAAATCACATCTCTCATTCA
ATTCCCACATTCTGTCTATAAACGACAAACTACAGTAGCCTGTATCATAT
CATTTGAAGGTTATTAAGTGTGATTTTCATTTTTAGCTCTTTACCTTAAT
CATATTTGCAGGCTGATAGCAAATCCTGAGGCAAGAGTGACTGCCCTTCA
AAGGTATGAATGATATTCAATGGGCATAGAGTGTTCTTTCTACAGTGAGA
TGCTGTGGAGTTAGGCTGGTGTTTTAGGATAGAGATTGGGACAGAGATTT
GTAGATATGGATATCTCTAGAGAGTTTTCTTCTGAGAATACCTGAAGCTC
TTCATCATGCCTTCCTAGGGAAGAAACTATTATTGGTCTTTA
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCTCCACGGGATTATTTTGTGTCGGAAGGAATTTCT
TTTCTGGTCCAGTCTATTTGGAGGTCTGTAGGCTTCTTGTATGTTCATGG
GCATCTCTTTCTTTAGGTTGGAGTTTTCTTTTATAATTTTGTTGAAGATA
TTTACTGGTCCTTTAAGTTGAAAGTCTTCATTCTCATCTGTACCTATTAA
TCTTAGATTTGGTCTTCTCACTGTGTCATGGATTTCCTGGGTGTTTTGAG
TTAGGATCTTTTTGTATTTTTTATTTTCTTTGATTGTTGTGCCCATGTTT
TTTATGGAGTCTTCTGCACCTGAGATTCTCTCTTCCATCTTTTGTATTCT
GTTGCTGATGCTCACAACTATGGTTCCTGATTTCTTTCCTAGGATTTCTA
TCTCCAGAGTTGTATCTGTTTGTGATTTCTTTATTGTTTCTACTTCCATC
TTTAGATCCTTGATAGTTTTGTTCAATTCCATCACCTGTTTGGAAGTGTT
TTCCTGTATCTCTCTAAGGGATTTTTGTGTTTCCTCTTTAAGGGATTCTA
GCTGTTAACCTGTGTTTTCCTGTATTTCCTCTTTAAAGTCCTCCATCATC
ATCATGAGAAGTGACTTTAGATCCATGTCTTGCTTTTCTGGTGTGATGTA
TCCAGGACTTGCTATGGTGGGAGAAGTTGGTTCTGATGTTGCAAGTAACC
TTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_e09.b1 MSMg01no509_e09.b1 CHROMAT_FILE:
MSMg01no509_e09.b1 PHD_FILE: MSMg01no509_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
         (560 letters)



>mm_chr19_12977487_12978447
          Length = 961

 Score =  986 bits (510), Expect = 0.0
 Identities = 548/561 (97%), Gaps = 1/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccttttttttctatatgtgctaaatttcttactttagtgtttatgcagtatagatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccttttttttctatatgtgctaaatttcttactttagtgtttatgcagtatagatac 260

                                                                       
Query: 61  ttatacatatctataaaagaaagaacactcaccatatagtagtcagtccaaaatgatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatacatatctataaaagaaagaacactcaccatatagtagtcagtccaaaatgatgaa 320

                                                                       
Query: 121 accatctatggaatgttggataggtaccttctgaggagcacttagcgtcaaaaattccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatctatggaatgttggataggtaccttctgaggagcacttagcgtcaaaaattccaa 380

                                                                       
Query: 181 acagtgtgggagaagctaaataagaaaatcatatttacataaaccaaggtctacagttat 240
           |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acagcgtggcagaagctaaataagaaaatcatatttccataaaccaaggtctacagttat 440

                                                                       
Query: 241 ttattanttttctatacctttgtaagagttacttacttctttcatatttgtaaaattaac 300
             || | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatcatttttctatgcctttgtaagagttacttacttctttcatatttgtaaaattaac 500

                                                                       
Query: 301 aaagtaaaaaaa-tcacatctctcattcaattcccacattctgtctataaacgacaaact 359
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aaagtaaaaaaaatcacatctctcattcaattcccacattctgtctataaatgacaaact 560

                                                                       
Query: 360 acagtagcctgtatcatatcatttgaaggttattaagtgtgattttcatttttagctctt 419
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 561 atagtagcctgtatcatatcatttgaaggttattaagtgtgattttaatttttagctctc 620

                                                                       
Query: 420 taccttaatcatatttgcaggctgatagcaaatcctgaggcaagagtgactgcccttcaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccttaatcatatttgcaggctgatagcaaatcctgaggcaagagtgactgcccttcaa 680

                                                                       
Query: 480 aggtatgaatgatattcaatgggcatagagtgttctttctacagtgagatgctgtggagt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtatgaatgatattcaatgggcatagagtgttctttctacagtgagatgctgtggagt 740

                                
Query: 540 taggctggtgttttaggatag 560
           |||||||||||||||||||||
Sbjct: 741 taggctggtgttttaggatag 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space:   523050
Effective search space used:   523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)