Query= MSMg01no509_f10.b1 MSMg01no509_f10.b1 CHROMAT_FILE:
MSMg01no509_f10.b1 PHD_FILE: MSMg01no509_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:33 2005
(577 letters)
>mm_chr19_21713414_21714390
Length = 977
Score = 1069 bits (553), Expect = 0.0
Identities = 571/581 (98%), Gaps = 9/581 (1%)
Strand = Plus / Plus
Query: 1 tcaaaaggtttcagatggaagccatgccgtttcagtctttcctgagaggcatgtgtcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaggtttcagatggaagccatgccgtttcagtctttcctgagaggcatgtgtcttg 260
Query: 61 ataaagacatatgaggtgattcagatagctgcttctctaagagaggggtgcaagccctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagacatatgaggtgattcagatagctgcttctctaagagaggggtgcaagccctga 320
Query: 121 tttaatgctaggactggggctggagaaatgggtcaatgattcaaagcacacacggttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatgctaggactggggctggagaaatgggtcaatgattcaaagcacacacggttgtt 380
Query: 181 tcagagaacccgagttcagttcccagcactctcagcggattgctcacaagcacctgcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagaacccgagttcagttcccagcactctcagcggattgctcacaagcacctgcaac 440
Query: 241 accttcttattta----tctgatggctctggcttcagtgggcaccactgtacacgtgtgc 296
|||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accttc--a---agggatctgatggctctggcttcagtgggcaccactgtacacgtgtgc 495
Query: 297 atgcccacaaagagaaacaagcacatgcatataactaaaaagtaataaaaataaaagctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgcccacaaagagaaacaagcacatgcatataactaaaaagtaataaaaataaaagctg 555
Query: 357 gggtgctgggatattgaacaaatactgcacttcagctttttctgtttccagtactagagt 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 556 gggtgctgggatattgaacaaatactgcacttcagctttttccgtttccagtactagagt 615
Query: 417 tcatacccaggccctgaagcacaccaggccagcactcagttactgacacagcaaccctac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcatacccaggccctgaagcacaccaggccagcactcagttactgacacagcaaccctac 675
Query: 477 taactccactgagatttcacttcaaatcctcatcctcaattgagctgtttaaaaaaaaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taactccactgagatttcacttcaaatcctcatcctcaattgagctgtttaaaaaaaaga 735
Query: 537 aatcctactatgagaaggcttcagggagctggctggagaag 577
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatcctactatgagaaggcttcagggagctggctggagaag 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_f10.g1 MSMg01no509_f10.g1 CHROMAT_FILE:
MSMg01no509_f10.g1 PHD_FILE: MSMg01no509_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:33 2005
(598 letters)
>mm_chr19_21890374_21891375
Length = 1002
Score = 845 bits (437), Expect = 0.0
Identities = 545/605 (90%), Gaps = 46/605 (7%)
Strand = Plus / Minus
Query: 1 agtttcttgtaacacttagattcaaatgctgtatatgcacattgtgtgggggggggcggg 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 916 agtttcttgtaacacttagattcaaatgctgtatatgcacattgtgt-ggggggtgcggg 858
Query: 61 gg-gaatgaatctgtacgcacaagtacaaaggtcaaagcagagcaccagctatcctgtct 119
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 857 ggagaatgaatctgtacgcacaattacaaaggtcagagcagagcaccagctatcttgtct 798
Query: 120 atcaccctcaccatattcttttgagacagtgtctctccctgaacctggaactaggctggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atcaccctcaccatattcttttgagacagtgtctctccctgaacctggaactaggctggt 738
Query: 180 agccagcaagcaccagccattcctgactctgcctgcacctgctctatagttacaggtgaa 239
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 737 agccagcaagcaccggccattcctgactctgcctgcacctgctctatggttacaagtgaa 678
Query: 240 catagccacag--gtgcacacagccacgggtgcacacagccacagtggtgcacacagcca 297
|| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 677 cacagccacagcggtgcacacagccacaggtgcacacagccacag----gcacacagcca 622
Query: 298 cagtggtgcacacaaccacaggtgcacacagccacaggtgcacacagccacaggcacaca 357
||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 cagtggtgcccacaaccacaggggcacacagccacaggtgcacacagccacagg------ 568
Query: 358 gccacaggtgtacacagccacaggtgcacacagcaacaggtgcacatagccacaggtgca 417
|||||| |||||||||||||||| ||||||||||||
Sbjct: 567 ----------tacaca--------------cagcaacaggtgcaca--gccacaggtgca 534
Query: 418 catagccacaggtgcacacagccacagg--cacacagccacaggtgcacacagccacagt 475
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 533 cacagccacaggtgcacacagccacaggtgcacacagccacaggtgcacacagccacagt 474
Query: 476 a--acacgcacagctgtctgctcaggtgctcctgcttgcacaagcaccttgccgactaaa 533
| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agtacac--acagctgcctgctcaggtgctcctgcttgcacaagcaccttgccgactaaa 416
Query: 534 tcatcactctaactccaacactctgccctttaacgatcatccatagatatggcagctgga 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 415 tcatcactctaactccaacactctgccctttaacgatcatccatagatatggtagctgga 356
Query: 594 gtctg 598
|||||
Sbjct: 355 gtctg 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 598
Length of database: 1002
Length adjustment: 10
Effective length of query: 588
Effective length of database: 992
Effective search space: 583296
Effective search space used: 583296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
