BAC Information

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BAC

Clone NameMSMg01-511G05
Chromosome19 (Build37)
Map Location 59,879,955 - 59,880,484
singlet/doubletsinglet
Overlap genenone
Upstream geneHspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G05.T7 (MSMg01no511_g05.b1)MSMg01-511G05.TJ (MSMg01no511_g05.g1)
ACCAG584595AG584596
length722742
length of high quality
(start - end)
532 (44 - 575)535 (73 - 607)
definitionCHROMAT_FILE: MSMg01no511_g05.b1 PHD_FILE: MSMg01no511_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:15 2005CHROMAT_FILE: MSMg01no511_g05.g1 PHD_FILE: MSMg01no511_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTGCATGCACGCACACATGCATACACATGCATGCACATGCACACA
CTAAATGTGGTATCCATAAGGGTGTAAAGGGGTCTGGGATAAGGAGCTTT
GAGTTTGACAGGCTAAGGCTATGACAGTGTTGAAGAACGAAGGCTATGAG
AAGGAAGGAGAAGATCCCAAGCAGCTGTTACACTCTAGGTGGTGTCTAAG
GGTTTCTATTGCTGTGATAAAATATGACCCAAGGCAACTTGGGGATGAAA
AGGTTGATTTCATCTTACATTTCCAATAACAATGTATCACTGAGGGATGT
CAGGGCAGGAACTCAAGTAGAGCAGGAACCTGGTAGCAGAGTGCGAACCT
GGTAGTGGAGGAACACTGCTTTCTGGCTTGCTCCCTCAGATTGCTTTCTG
ATACAAATCAAGAGCACTTGCACAGGGGTTTGTCCTACCATGGTTGGGCC
TTACATCAATCACCAATTAAGAAAATACCATCATGGGCTTGTGTACAAGC
CAATTTTATAGAGGCATCTTCTCAGTTAAGATTCCATCTTCCCAGATGTC
TGGGTCGGGTCAGGTTGACAATCGCATCAAGAACAGTTGGTAGAAACACC
ACATGCACTTGAAAAGCAAGATCAAGGGGAAAGGTTCAGCCTGTGAGATG
TGCTCATGCCCCAGGGAGCTGT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTCCTGAAACCCTCTAGTACCTTGGAA
ATATGACTTATCACCAGAGAATAGATCAGAAATTATTACACATACACAGT
AGAACATTAGTTATTCTAAAGAAAAGAGCTATCAAGTAATGAAGAGGCGT
TCAGGGAATCTTGAGTGCTGATTGTCAGCAGAAGCCAGTCTGCAAAGGCT
AGTACTGTATGACTCCACTCCTTCACATTCAGGAAGAGGCAAACTATAGA
GTCAGTTTAAAAAAAAAAAAAGCAAAAGTGGTTGCCACCGGGTTGAGAAA
GAAGGAAAAGAGAGGGTTGTGGGGCACAAGGGCCATTTAGGACAGTGAAA
CTCTTCTACACAGAATCTAATGTTAGGTTATGTGTTCAACACTTGTCAAA
ACCCACAGACATGCGGACCTGAGAGAGGGATTCCTAATATATACTCTTGA
CTCCAGTAAATGATGTGTTGTTATAGATTCCAGTTAAAAGAAATGTGCCA
CACTCAAGACGACAACAGTAAGGGACAGCTCAGGGAAGGACAGAGAAAGA
ATGACTCTGGGAAGCCTATTTGTGTGTGTGTGTGCGTGTGTGCGTTGCGC
CGCCTCTTTTTTCTTTTCTTCTCCCTTTCTTCCCCGCCGCCTGTCCCTTC
CTTATTCGCTCTCCCCCCTTCTCCTCCCCTCTCCTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g05.b1 MSMg01no511_g05.b1 CHROMAT_FILE:
MSMg01no511_g05.b1 PHD_FILE: MSMg01no511_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:15 2005
         (532 letters)



>mm_chr19_59879753_59880684
          Length = 932

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%), Gaps = 1/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattc-cagtgcatgcacgcacacatgcatacacatgcatgcacatgcacacactaaa 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcacagtgcatgcacgcacacatgcatacacatgcatgcacatgcacacactaaa 262

                                                                       
Query: 63  tgtggtatccataagggtgtaaaggggtctgggataaggagctttgagtttgacaggcta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtggtatccataagggtgtaaaggggtctgggataaggagctttgagtttgacaggcta 322

                                                                       
Query: 123 aggctatgacagtgttgaagaacgaaggctatgagaaggaaggagaagatcccaagcagc 182
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggctatgacagtgttgaagaaggaaggctatgagaaggaaggagaagatcccaagcagc 382

                                                                       
Query: 183 tgttacactctaggtggtgtctaagggtttctattgctgtgataaaatatgacccaaggc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgttacactctaggtggtgtctaagggtttctattgctgtgataaaatatgacccaaggc 442

                                                                       
Query: 243 aacttggggatgaaaaggttgatttcatcttacatttccaataacaatgtatcactgagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacttggggatgaaaaggttgatttcatcttacatttccaataacaatgtatcactgagg 502

                                                                       
Query: 303 gatgtcagggcaggaactcaagtagagcaggaacctggtagcagagtgcgaacctggtag 362
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 gatgtcagggcaggaactcaagtagagcaggaacctggtagcagagtgggaacctggtag 562

                                                                       
Query: 363 tggaggaacactgctttctggcttgctccctcagattgctttctgatacaaatcaagagc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggaggaacactgctttctggcttgctccctcagattgctttctgatacaaatcaagagc 622

                                                                       
Query: 423 acttgcacaggggtttgtcctaccatggttgggccttacatcaatcaccaattaagaaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acttgcacaggggtttgtcctaccatggttgggccttacatcaatcaccaattaagaaaa 682

                                                             
Query: 483 taccatcatgggcttgtgtacaagccaattttatagaggcatcttctcag 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taccatcatgggcttgtgtacaagccaattttatagaggcatcttctcag 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)