Query= MSMg01no511_k17.b1 MSMg01no511_k17.b1 CHROMAT_FILE:
MSMg01no511_k17.b1 PHD_FILE: MSMg01no511_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:36 2005
(685 letters)
>mm_chr19_23986224_23987308
Length = 1085
Score = 1147 bits (593), Expect = 0.0
Identities = 662/691 (95%), Gaps = 10/691 (1%)
Strand = Plus / Minus
Query: 5 gaattctcatattcttcactgtggcctgtgactaccaaactggacagatgaaccatggct 64
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1030 gaattctcatattcaacactgtggcctgcaactaccaaactggacagatgaaccatggct 971
Query: 65 ttcactgacaaacggcaggcacaccgccgaggagaagaaatactttctcagggtggtttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ttcactgacaaacggcaggcacaccgccgaggagaagaaatactttctcagggtggtttc 911
Query: 125 cgtcagggcgggcag----------aggtggaaacaataaagcactaacggggtaaaaca 174
||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct: 910 cgtcagggcgggcagaggtggaaacaggtggaaacaataaagcattatcggggtaaaaca 851
Query: 175 aaacaggcgtgagacaggaaggtggcgccttacctctttatttgtggaggcttctgtggg 234
||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct: 850 aaacaggcgtgagacaggaagatggtgccttacctctttatttgtggaggcttccgtggg 791
Query: 235 gtcaccgggatgaaggggtatgcttgatgactcagcacccaggggtgaggaactgccagg 294
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtcgccgggatgaaggggtatgcttgatgactcagcacccaggggtgaggaactgccagg 731
Query: 295 agatggagactggaacacaggaagagggacagacagcagtgaggatctgaggcctgtggc 354
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 730 agacggagactggaacacaggaagagggacagacagcagtgaggatctgagggctgtggc 671
Query: 355 atcaagtcacacagagcagaaccacccggacaggaccgcagttgggggaagcctttttgg 414
|||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 670 atcaagtcacccagagcagaaccgcccggacaggaccgcagttgggggaagactttttgg 611
Query: 415 caagaagaattgcaaactgcactgagcaggcctggtcaggcaagctttcaactccacctc 474
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 caagaagaattgcaaactgcactgagcaggcctggccaggcaagctttcaactccacctc 551
Query: 475 ttcaaaggagttttacagcttcgggactttttcttccctcgggctaatattttaaagaaa 534
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttcaaaggagttctacagcttcgggactttttcttccctcgggctaatattttaaagaaa 491
Query: 535 atacagacttacagtaggcatcaaatttaaagcctcaagggtattacacaacatgttaat 594
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atacagacttatagtaggcatcaaatttaaagcctcaagggtattacacaacatgttaat 431
Query: 595 tttttttcttagtgaaagttagatacttagaatacaaatgtcacctgctcaagatgacct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttttttcttagtgaaagttagatacttagaatacaaatgtcacctgctcaagatgacct 371
Query: 655 acatggaaagctgataactaaaattacccag 685
|||||||||||||| ||||||||||||||||
Sbjct: 370 acatggaaagctgaaaactaaaattacccag 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_k17.g1 MSMg01no511_k17.g1 CHROMAT_FILE:
MSMg01no511_k17.g1 PHD_FILE: MSMg01no511_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:36 2005
(473 letters)
>mm_chr19_23820761_23821631
Length = 871
Score = 818 bits (423), Expect = 0.0
Identities = 460/473 (97%), Gaps = 2/473 (0%)
Strand = Plus / Plus
Query: 1 ttaagagtgtgttcaggcctcttataaatgccattttctacgtcacacaaatgagatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagagtgtgttcaggcctcttataaatgccattttctacgtcacacaaatgagatgaa 260
Query: 61 gaaatgaatcggttcacagcaccaggagaatgaaaattatttccaagtggcaaggacagg 120
|||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||||
Sbjct: 261 gaaatgaatcagttcacagcaccaggaaaatgagaattatttccaagtgtcaacgacagg 320
Query: 121 tagaaagttgcttccctggtcccatgacatgtggtcccttaacctatcagactttgttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaagttgcttccctggtcccatgacatgtggtcccttaacctatcagactttgttat 380
Query: 181 gaatggctgaaagtctgccagcacctgacaggtttctcggttctgtcttggtttctgcac 240
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct: 381 gaatggctgaaagtctgccagcacctgacaggtttctcagttctgtcttggctcctgcac 440
Query: 241 gtcctgcctatttgatctgcagtgcccagctgcatggggggctgaaatggaaatgtgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctgcctatttgatctgcagtgcccagctgcatggggggctgaaatggaaatgtgctt 500
Query: 301 tggaaacacaatccctggcaaatctcctaacctaggggcatttccgtgggcagatctaat 360
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tggaaaca--atccctggcaaatctcctaacctaggggcatttccatgggcagatctaat 558
Query: 361 aaggaggtatgagtttgagggagcaggtagaacaatagaaactgtgtgcatgcatgtgtt 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 aaggaggtatgagtttgagggagcaggtagaacaacagaaactgtgtgcatgcatgtgtt 618
Query: 421 gtatgtttatgtgtctataggtgtgttatatgtgtgtatgtgtgaatatgtat 473
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 619 gtatgtttatgtgtctataggtgtgttatatgtgtgtttgtgtgaatatgtat 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
